Strain identifier
BacDive ID: 4980
Type strain:
Species: Leclercia adecarboxylata
Strain history: CIP <- 1982, ATCC <- H. Leclerc: strain 1783, Escherichia leclercia
NCBI tax ID(s): 911008 (strain), 83655 (species)
General
@ref: 1924
BacDive-ID: 4980
DSM-Number: 5077
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Leclercia adecarboxylata DSM 5077 is a mesophilic bacterium that was isolated from Drinking water.
NCBI tax id
NCBI tax id | Matching level |
---|---|
83655 | species |
911008 | strain |
strain history
@ref | history |
---|---|
1924 | <- ATCC |
67770 | ATCC 23216 <-- H. Leclerc 1783. |
116037 | CIP <- 1982, ATCC <- H. Leclerc: strain 1783, Escherichia leclercia |
doi: 10.13145/bacdive4980.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Enterobacterales
- family: Enterobacteriaceae
- genus: Leclercia
- species: Leclercia adecarboxylata
- full scientific name: Leclercia adecarboxylata (Leclerc 1962) Tamura et al. 1987
synonyms
- @ref: 20215
- synonym: Escherichia adecarboxylata
@ref: 1924
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Enterobacteriales, not validated
family: Enterobacteriaceae
genus: Leclercia
species: Leclercia adecarboxylata
full scientific name: Leclercia adecarboxylata (Leclerc 1962) Tamura et al. 1987
type strain: yes
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
1924 | NUTRIENT AGAR (DSMZ Medium 1) | yes | https://mediadive.dsmz.de/medium/1 | Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water |
37726 | MEDIUM 3 - Columbia agar | yes | Columbia agar (39.000 g);distilled water (1000.000 ml) | |
116037 | CIP Medium 3 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
1924 | positive | growth | 37 | mesophilic |
37726 | positive | growth | 30 | mesophilic |
67770 | positive | growth | 37 | mesophilic |
Isolation, sampling and environmental information
isolation
@ref | sample type |
---|---|
67770 | Drinking water |
116037 | Environment, Drinking water |
taxonmaps
- @ref: 69479
- File name: preview.99_66.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_6;96_7;97_7;98_17;99_66&stattab=map
- Last taxonomy: Enterobacterales
- 16S sequence: JN175338
- Sequence Identity:
- Total samples: 14221
- soil counts: 575
- aquatic counts: 888
- animal counts: 11838
- plant counts: 920
Safety information
risk assessment
@ref | biosafety level | biosafety level comment |
---|---|---|
1924 | 2 | Risk group (German classification) |
116037 | 1 | Risk group (French classification) |
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | Leclercia adecarboxylata strain CIP 82.92 16S ribosomal RNA gene, complete sequence | JN175338 | 1527 | ena | 83655 |
20218 | Leclercia adecarboxylata strain LMG 2803 16S ribosomal RNA gene, partial sequence | GQ856082 | 1506 | ena | 911008 |
20218 | Leclercia adecarboxylata gene for 16S rRNA, partial sequence, strain: NBRC 102595 | AB681872 | 1465 | ena | 83655 |
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Leclercia adecarboxylata NCTC13032 | GCA_901472455 | complete | ncbi | 83655 |
66792 | Leclercia adecarboxylata ATCC 23216 = NBRC 102595 | 911008.4 | wgs | patric | 911008 |
66792 | Leclercia adecarboxylata ATCC 23216 = NBRC 102595 | 911008.3 | wgs | patric | 911008 |
66792 | Leclercia adecarboxylata strain FDAARGOS_1505 | 83655.142 | complete | patric | 83655 |
66792 | Leclercia adecarboxylata strain NCTC13032 | 83655.107 | complete | patric | 83655 |
66792 | Leclercia adecarboxylata NBRC 102595 | 2731957556 | draft | img | 911008 |
66792 | Leclercia adecarboxylata Leclerc 1783, ATCC 23216 | 2588253789 | draft | img | 911008 |
67770 | Leclercia adecarboxylata ATCC 23216 = NBRC 102595 | GCA_001515505 | contig | ncbi | 911008 |
67770 | Leclercia adecarboxylata ATCC 23216 = NBRC 102595 | GCA_000735515 | contig | ncbi | 911008 |
67770 | Leclercia adecarboxylata strain NCTC13032 genome assembly, chromosome: 1 | LR590464 | ncbi | 83655 | |
66792 | Leclercia adecarboxylata ATCC 23216 = NBRC 102595 | GCA_025421755 | contig | ncbi | 911008 |
66792 | Leclercia adecarboxylata strain FDAARGOS_1505 | 83655.151 | complete | patric | 83655 |
66792 | Leclercia adecarboxylata strain FDAARGOS_1505 | 83655.145 | complete | patric | 83655 |
66792 | Leclercia adecarboxylata strain FDAARGOS_1505 | 83655.148 | complete | patric | 83655 |
GC content
- @ref: 1924
- GC-content: 52.55
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
flagellated | no | 65.962 | no |
gram-positive | no | 98.127 | no |
anaerobic | no | 96.4 | no |
aerobic | yes | 82.919 | no |
halophile | no | 89.415 | no |
spore-forming | no | 95.103 | no |
thermophile | no | 99.394 | no |
glucose-util | yes | 94.616 | no |
motile | yes | 88.249 | no |
glucose-ferment | yes | 90.906 | no |
External links
@ref: 1924
culture collection no.: DSM 5077, ATCC 23216, DSM 30081, IAM 14240, JCM 1667, BCRC 12160, CCUG 14184, CIP 82.92, HAMBI 1696, KCTC 1036, LMG 2803, NBRC 102595, NCIMB 13153, NCTC 13032, VTT E-991143
straininfo link
- @ref: 74476
- straininfo: 125843
literature
- topic: Phylogeny
- Pubmed-ID: 24824638
- title: Enterobacter xiangfangensis sp. nov., isolated from Chinese traditional sourdough, and reclassification of Enterobacter sacchari Zhu et al. 2013 as Kosakonia sacchari comb. nov.
- authors: Gu CT, Li CY, Yang LJ, Huo GC
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.064709-0
- year: 2014
- mesh: Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Enterobacter/*classification/genetics/isolation & purification, Fatty Acids/chemistry, Fermentation, *Food Microbiology, Genes, Bacterial, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA
- topic2: Biotechnology
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
1924 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 5077) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-5077 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
37726 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/11368 | ||||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
74476 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID125843.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
116037 | Curators of the CIP | Collection of Institut Pasteur (CIP 82.92) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2082.92 |