Strain identifier

BacDive ID: 4980

Type strain: Yes

Species: Leclercia adecarboxylata

Strain history: CIP <- 1982, ATCC <- H. Leclerc: strain 1783, Escherichia leclercia

NCBI tax ID(s): 911008 (strain), 83655 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 1924

BacDive-ID: 4980

DSM-Number: 5077

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Leclercia adecarboxylata DSM 5077 is a mesophilic bacterium that was isolated from Drinking water.

NCBI tax id

NCBI tax idMatching level
83655species
911008strain

strain history

@refhistory
1924<- ATCC
67770ATCC 23216 <-- H. Leclerc 1783.
116037CIP <- 1982, ATCC <- H. Leclerc: strain 1783, Escherichia leclercia

doi: 10.13145/bacdive4980.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Enterobacteriaceae
  • genus: Leclercia
  • species: Leclercia adecarboxylata
  • full scientific name: Leclercia adecarboxylata (Leclerc 1962) Tamura et al. 1987
  • synonyms

    • @ref: 20215
    • synonym: Escherichia adecarboxylata

@ref: 1924

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacteriales, not validated

family: Enterobacteriaceae

genus: Leclercia

species: Leclercia adecarboxylata

full scientific name: Leclercia adecarboxylata (Leclerc 1962) Tamura et al. 1987

type strain: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
1924NUTRIENT AGAR (DSMZ Medium 1)yeshttps://mediadive.dsmz.de/medium/1Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
37726MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)
116037CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3

culture temp

@refgrowthtypetemperaturerange
1924positivegrowth37mesophilic
37726positivegrowth30mesophilic
67770positivegrowth37mesophilic

Isolation, sampling and environmental information

isolation

@refsample type
67770Drinking water
116037Environment, Drinking water

taxonmaps

  • @ref: 69479
  • File name: preview.99_66.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_6;96_7;97_7;98_17;99_66&stattab=map
  • Last taxonomy: Enterobacterales
  • 16S sequence: JN175338
  • Sequence Identity:
  • Total samples: 14221
  • soil counts: 575
  • aquatic counts: 888
  • animal counts: 11838
  • plant counts: 920

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
19242Risk group (German classification)
1160371Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Leclercia adecarboxylata strain CIP 82.92 16S ribosomal RNA gene, complete sequenceJN1753381527ena83655
20218Leclercia adecarboxylata strain LMG 2803 16S ribosomal RNA gene, partial sequenceGQ8560821506ena911008
20218Leclercia adecarboxylata gene for 16S rRNA, partial sequence, strain: NBRC 102595AB6818721465ena83655

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Leclercia adecarboxylata NCTC13032GCA_901472455completencbi83655
66792Leclercia adecarboxylata ATCC 23216 = NBRC 102595911008.4wgspatric911008
66792Leclercia adecarboxylata ATCC 23216 = NBRC 102595911008.3wgspatric911008
66792Leclercia adecarboxylata strain FDAARGOS_150583655.142completepatric83655
66792Leclercia adecarboxylata strain NCTC1303283655.107completepatric83655
66792Leclercia adecarboxylata NBRC 1025952731957556draftimg911008
66792Leclercia adecarboxylata Leclerc 1783, ATCC 232162588253789draftimg911008
67770Leclercia adecarboxylata ATCC 23216 = NBRC 102595GCA_001515505contigncbi911008
67770Leclercia adecarboxylata ATCC 23216 = NBRC 102595GCA_000735515contigncbi911008
67770Leclercia adecarboxylata strain NCTC13032 genome assembly, chromosome: 1LR590464ncbi83655
66792Leclercia adecarboxylata ATCC 23216 = NBRC 102595GCA_025421755contigncbi911008
66792Leclercia adecarboxylata strain FDAARGOS_150583655.151completepatric83655
66792Leclercia adecarboxylata strain FDAARGOS_150583655.145completepatric83655
66792Leclercia adecarboxylata strain FDAARGOS_150583655.148completepatric83655

GC content

  • @ref: 1924
  • GC-content: 52.55

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
flagellatedno65.962no
gram-positiveno98.127no
anaerobicno96.4no
aerobicyes82.919no
halophileno89.415no
spore-formingno95.103no
thermophileno99.394no
glucose-utilyes94.616no
motileyes88.249no
glucose-fermentyes90.906no

External links

@ref: 1924

culture collection no.: DSM 5077, ATCC 23216, DSM 30081, IAM 14240, JCM 1667, BCRC 12160, CCUG 14184, CIP 82.92, HAMBI 1696, KCTC 1036, LMG 2803, NBRC 102595, NCIMB 13153, NCTC 13032, VTT E-991143

straininfo link

  • @ref: 74476
  • straininfo: 125843

literature

  • topic: Phylogeny
  • Pubmed-ID: 24824638
  • title: Enterobacter xiangfangensis sp. nov., isolated from Chinese traditional sourdough, and reclassification of Enterobacter sacchari Zhu et al. 2013 as Kosakonia sacchari comb. nov.
  • authors: Gu CT, Li CY, Yang LJ, Huo GC
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.064709-0
  • year: 2014
  • mesh: Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Enterobacter/*classification/genetics/isolation & purification, Fatty Acids/chemistry, Fermentation, *Food Microbiology, Genes, Bacterial, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA
  • topic2: Biotechnology

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
1924Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 5077)https://www.dsmz.de/collection/catalogue/details/culture/DSM-5077
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
37726Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/11368
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
74476Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID125843.1StrainInfo: A central database for resolving microbial strain identifiers
116037Curators of the CIPCollection of Institut Pasteur (CIP 82.92)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2082.92