Strain identifier
BacDive ID: 4950
Type strain:
Species: Klebsiella pneumoniae
Strain Designation: PZH
Strain history: <- ATCC <- Z. Schneider, PZH, 572 (Enterobacter aerogenes) <- B. Zagalak, PZH
NCBI tax ID(s): 1316938 (strain), 573 (species)
General
@ref: 1826
BacDive-ID: 4950
DSM-Number: 4799
keywords: genome sequence, Bacteria, mesophilic, Gram-negative, human pathogen
description: Klebsiella pneumoniae PZH is a mesophilic, Gram-negative human pathogen of the family Enterobacteriaceae.
NCBI tax id
NCBI tax id | Matching level |
---|---|
1316938 | strain |
573 | species |
strain history
- @ref: 1826
- history: <- ATCC <- Z. Schneider, PZH, 572 (Enterobacter aerogenes) <- B. Zagalak, PZH
doi: 10.13145/bacdive4950.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Enterobacterales
- family: Enterobacteriaceae
- genus: Klebsiella
- species: Klebsiella pneumoniae
- full scientific name: Klebsiella pneumoniae (Schroeter 1886) Trevisan 1887 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Hyalococcus pneumoniae
@ref: 1826
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Enterobacteriales, not validated
family: Enterobacteriaceae
genus: Klebsiella
species: Klebsiella pneumoniae
full scientific name: Klebsiella pneumoniae (Schroeter 1886) Trevisan 1887
strain designation: PZH
type strain: no
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 99.974
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
1826 | COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) | yes | https://mediadive.dsmz.de/medium/693 | Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base |
1826 | NUTRIENT AGAR (DSMZ Medium 1) | yes | https://mediadive.dsmz.de/medium/1 | Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water |
culture temp
- @ref: 1826
- growth: positive
- type: growth
- temperature: 25
- range: mesophilic
Physiology and metabolism
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | no | 100 |
69480 | no | 99.948 |
compound production
- @ref: 1826
- compound: glycerol dehydrase
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
68368 | 30849 | L-arabinose | + | fermentation |
68368 | 27613 | amygdalin | + | fermentation |
68368 | 28053 | melibiose | + | fermentation |
68368 | 17992 | sucrose | + | fermentation |
68368 | 62345 | L-rhamnose | + | fermentation |
68368 | 30911 | sorbitol | + | fermentation |
68368 | 17268 | myo-inositol | + | fermentation |
68368 | 16899 | D-mannitol | + | fermentation |
68368 | 17634 | D-glucose | + | fermentation |
68368 | 5291 | gelatin | - | hydrolysis |
68368 | 27897 | tryptophan | - | energy source |
68368 | 16947 | citrate | + | assimilation |
68368 | 18257 | ornithine | - | degradation |
68368 | 25094 | lysine | + | degradation |
68368 | 29016 | arginine | - | hydrolysis |
metabolite production
@ref | Chebi-ID | metabolite | production |
---|---|---|---|
68368 | 15688 | acetoin | yes |
68368 | 35581 | indole | no |
68368 | 16136 | hydrogen sulfide | no |
metabolite tests
@ref | Chebi-ID | metabolite | voges-proskauer-test | indole test |
---|---|---|---|---|
68368 | 15688 | acetoin | + | |
68368 | 35581 | indole | - |
enzymes
@ref | value | activity | ec |
---|---|---|---|
68368 | cytochrome oxidase | - | 1.9.3.1 |
68368 | gelatinase | - | |
68368 | tryptophan deaminase | - | 4.1.99.1 |
68368 | ornithine decarboxylase | - | 4.1.1.17 |
68368 | lysine decarboxylase | + | 4.1.1.18 |
68368 | arginine dihydrolase | - | 3.5.3.6 |
68368 | beta-galactosidase | + | 3.2.1.23 |
API 20E
@ref | ONPG | ADH Arg | LDC Lys | ODC | CIT | H2S | URE | TDA Trp | IND | VP | GEL | GLU | MAN | INO | Sor | RHA | SAC | MEL | AMY | ARA | OX |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1826 | + | - | + | - | + | - | - | - | - | + | - | + | + | + | + | + | + | + | + | + | - |
1826 | + | - | + | - | + | - | + | - | - | + | - | + | + | + | + | + | + | + | + | + | - |
Safety information
risk assessment
- @ref: 1826
- pathogenicity human: yes
- pathogenicity animal: yes
- biosafety level: 2
- biosafety level comment: Risk group (German classification)
Sequence information
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Klebsiella pneumoniae ATCC 25955 | GCA_000409715 | contig | ncbi | 1316938 |
66792 | Klebsiella pneumoniae ATCC 25955 | 1316938.3 | wgs | patric | 1316938 |
66792 | Klebsiella pneumoniae ATCC 25955 | 2554235128 | draft | img | 1316938 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 100 | no |
motile | no | 85.111 | no |
gram-positive | no | 97.212 | no |
anaerobic | no | 96.399 | no |
halophile | no | 87.614 | no |
spore-forming | no | 93.471 | no |
glucose-util | yes | 93.864 | no |
flagellated | no | 92.695 | no |
thermophile | no | 99.64 | no |
aerobic | yes | 90.944 | no |
glucose-ferment | yes | 91.204 | yes |
External links
@ref: 1826
culture collection no.: DSM 4799, ATCC 25955, PZH 572
straininfo link
- @ref: 74446
- straininfo: 3120
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Enzymology | 407082 | Immunochemical evidence for the difference between coenzyme-B12-dependent diol dehydratase and glycerol dehydratase. | Toraya T, Fukui S | Eur J Biochem | 10.1111/j.1432-1033.1977.tb11594.x | 1977 | Cations, Monovalent, Cobamides, Culture Media, Enterobacteriaceae/enzymology, Glycerol/pharmacology, Hydro-Lyases/*metabolism, Immunodiffusion, Kinetics, Klebsiella pneumoniae/drug effects/*enzymology, Propanediol Dehydratase/*metabolism, Propylene Glycols/pharmacology, Species Specificity | Cultivation |
719056 | [Effect of the structure of the nucleoside ligand of cobalamines on their enzymatic properties in a glycerol dehydratase system]. | Iakusheva MI, Gurevich VM, Poznanskaia AA, Iakovlev VA, Khogenkamp G | Biokhimiia | 1978 | Chemical Phenomena, Chemistry, Circular Dichroism, *Cobamides, Glycerol, *Hydro-Lyases, Ligands, Nucleosides, Structure-Activity Relationship | |||
Metabolism | 1785929 | 1,3-Propanediol production by Escherichia coli expressing genes from the Klebsiella pneumoniae dha regulon. | Tong IT, Liao HH, Cameron DC | Appl Environ Microbiol | 10.1128/aem.57.12.3541-3546.1991 | 1991 | Anaerobiosis, Blotting, Southern, Cloning, Molecular, Cosmids, Dihydroxyacetone/metabolism, Escherichia coli/*genetics/metabolism, Gas Chromatography-Mass Spectrometry, Gene Expression Regulation, Bacterial, Glycerol/metabolism, Kinetics, Klebsiella pneumoniae/*genetics/metabolism, Propylene Glycols/*metabolism, Restriction Mapping, Transformation, Bacterial | Enzymology |
Enzymology | 6753954 | [Coenzyme properties of adenosylcobalamin analogs with modifications in the purine nucleus of the alpha-ligand]. | Iakusheva MI, Gurevich VM, Poznanskaia AA | Biokhimiia | 1982 | Cobamides/*pharmacology, Hydro-Lyases/*metabolism, Kinetics, Klebsiella pneumoniae/enzymology, Protein Binding, Structure-Activity Relationship | Metabolism | |
Metabolism | 7035429 | Glycerol fermentation in Klebsiella pneumoniae: functions of the coenzyme B12-dependent glycerol and diol dehydratases. | Forage RG, Foster MA | J Bacteriol | 10.1128/jb.149.2.413-419.1982 | 1982 | Alcohol Oxidoreductases/metabolism, Cobalt/pharmacology, Cobamides/pharmacology, Dihydroxyacetone, Enzyme Induction, Fermentation, Glycerol/*metabolism, Hydro-Lyases/*metabolism, Klebsiella pneumoniae/*enzymology/genetics, Mutation, Propanediol Dehydratase/*metabolism | Enzymology |
Metabolism | 12018293 | Production of 1,3-propanediol by Klebsiella pneumoniae. | Huang H, Gong CS, Tsao GT | Appl Biochem Biotechnol | 2002 | Aerobiosis, Anaerobiosis, Biotechnology/methods, Fermentation, Food Analysis, Glycerol/metabolism, Kinetics, Klebsiella pneumoniae/growth & development/*metabolism, Lubrication, Models, Biological, Polymers, Propylene Glycols/*metabolism | Biotechnology | |
Metabolism | 19921491 | Microbial fed-batch production of 1,3-propanediol using raw glycerol with suspended and immobilized Klebsiella pneumoniae. | Jun SA, Moon C, Kang CH, Kong SW, Sang BI, Um Y | Appl Biochem Biotechnol | 10.1007/s12010-009-8839-x | 2010 | Biofuels, Bioreactors, Fermentation, Glycerol/*metabolism, Industrial Microbiology/*methods, Klebsiella pneumoniae/cytology/*metabolism, Propylene Glycols/*metabolism | Biotechnology |
Pathogenicity | 22474970 | Essential oil composition and antibacterial activity of Monticalia greenmaniana (Asteraceae). | Cardenas J, Rojas J, Rojas-Fermin L, Lucena M, Buitrago A | Nat Prod Commun | 2012 | Anti-Bacterial Agents/chemistry/*pharmacology, Asteraceae/*chemistry, Bacteria/drug effects, Microbial Sensitivity Tests, Oils, Volatile/chemistry/*pharmacology, Plant Components, Aerial/chemistry, Plant Oils/chemistry/*pharmacology | ||
Genetics | 23929480 | Genome Sequence of Klebsiella pneumoniae Strain ATCC 25955, an Oxygen-Insensitive Producer of 1,3-Propanediol. | Wang Y, Tao F, Li C, Li L, Xu P | Genome Announc | 10.1128/genomeA.00587-13 | 2013 |
Reference
@id | authors | catalogue | doi/url | title |
---|---|---|---|---|
1826 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 4799) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-4799 | |
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
68368 | Automatically annotated from API 20E | |||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |
74446 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID3120.1 | StrainInfo: A central database for resolving microbial strain identifiers |