Strain identifier

BacDive ID: 4932

Type strain: Yes

Species: Escherichia albertii

Strain Designation: 19982

Strain history: CIP <- 2003, CCUG <- 2002, D. Janssens, LMG, Ghent, Belgium <- G. Huys, Ghent, Belgium <- M.J. Albert

NCBI tax ID(s): 1115511 (strain), 208962 (species)

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General

@ref: 7069

BacDive-ID: 4932

DSM-Number: 17582

keywords: genome sequence, 16S sequence, Bacteria, facultative anaerobe, mesophilic, Gram-negative, rod-shaped, human pathogen

description: Escherichia albertii 19982 is a facultative anaerobe, mesophilic, Gram-negative human pathogen that was isolated from stool from diarrhoeal child.

NCBI tax id

NCBI tax idMatching level
208962species
1115511strain

strain history

@refhistory
7069<- CIP <- CCUG <- LMG <- G. Huys <- M. J. Albert, Centre for Diarrhoeal Disease Research, Bangladesh
67770LMG 20976 <-- G. Huys R-14430 <-- M. J. Albert 19982 <-- Int. Centre for Diarrhoeal Dis. Res., Bangladesh.
116184CIP <- 2003, CCUG <- 2002, D. Janssens, LMG, Ghent, Belgium <- G. Huys, Ghent, Belgium <- M.J. Albert

doi: 10.13145/bacdive4932.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Enterobacteriaceae
  • genus: Escherichia
  • species: Escherichia albertii
  • full scientific name: Escherichia albertii Huys et al. 2003

@ref: 7069

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacteriales, not validated

family: Enterobacteriaceae

genus: Escherichia

species: Escherichia albertii

full scientific name: Escherichia albertii Huys et al. 2003

strain designation: 19982

type strain: yes

Morphology

cell morphology

  • @ref: 116184
  • gram stain: negative
  • cell shape: rod-shaped

colony morphology

  • @ref: 116184

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
7069TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)yeshttps://mediadive.dsmz.de/medium/535Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
33868MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)
7069TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yeshttps://mediadive.dsmz.de/medium/92Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
7069COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
116184CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72
116184CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3

culture temp

@refgrowthtypetemperaturerange
7069positivegrowth30mesophilic
33868positivegrowth30mesophilic
67770positivegrowth30mesophilic
116184positivegrowth10-41
116184nogrowth5psychrophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 116184
  • oxygen tolerance: facultative anaerobe

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371gluconate+builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose+builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose-builds acid from32528
68371gentiobiose-builds acid from28066
68371xylitol-builds acid from17151
68371glycogen-builds acid from28087
68371starch-builds acid from28017
68371raffinose-builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371trehalose+builds acid from27082
68371sucrose-builds acid from17992
68371melibiose-builds acid from28053
68371lactose+builds acid from17716
68371maltose+builds acid from17306
68371cellobiose-builds acid from17057
68371salicin-builds acid from17814
68371arbutin-builds acid from18305
68371amygdalin-builds acid from27613
68371N-acetylglucosamine+builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol+builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose+builds acid from16024
68371D-fructose+builds acid from15824
68371D-glucose+builds acid from17634
68371D-galactose+builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose-builds acid from65327
68371D-ribose+builds acid from16988
68371L-arabinose+builds acid from30849
68371erythritol-builds acid from17113
68371glycerol+builds acid from17754
68368L-arabinose+fermentation30849
68368amygdalin-fermentation27613
68368melibiose-fermentation28053
68368sucrose-fermentation17992
68368L-rhamnose-fermentation62345
68368sorbitol-fermentation30911
68368myo-inositol-fermentation17268
68368D-mannitol+fermentation16899
68368D-glucose+fermentation17634
68368gelatin-hydrolysis5291
68368tryptophan+energy source27897
68368urea-hydrolysis16199
68368citrate-assimilation16947
68368ornithine+degradation18257
68368lysine+degradation25094
68368arginine-hydrolysis29016
116184mannitol+fermentation29864
116184citrate+carbon source16947
116184esculin-hydrolysis4853
116184glucose+fermentation17234
116184lactose-fermentation17716
116184nitrate+reduction17632
116184nitrite+reduction16301
116184malonate-assimilation15792
116184sodium thiosulfate-builds gas from132112

antibiotic resistance

  • @ref: 116184
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

@refChebi-IDmetaboliteproduction
6836815688acetoinno
6836835581indoleyes
6836816136hydrogen sulfideno
11618435581indoleyes

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole testmethylred-test
6836815688acetoin-
6836835581indole+
11618415688acetoin-
11618417234glucose+

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase-3.2.1.21
68382alpha-glucosidase+3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase+3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase+
68382acid phosphatase+3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin+3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase+
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)-
68382esterase (C 4)+
68382alkaline phosphatase+3.1.3.1
68368gelatinase-
68368tryptophan deaminase-4.1.99.1
68368urease-3.5.1.5
68368ornithine decarboxylase+4.1.1.17
68368lysine decarboxylase+4.1.1.18
68368arginine dihydrolase-3.5.3.6
68368beta-galactosidase+3.2.1.23
116184oxidase-
116184beta-galactosidase+3.2.1.23
116184alcohol dehydrogenase-1.1.1.1
116184gelatinase-
116184catalase+1.11.1.6
116184lysine decarboxylase+4.1.1.18
116184ornithine decarboxylase+4.1.1.17
116184phenylalanine ammonia-lyase-4.3.1.24
116184tryptophan deaminase-
116184urease-3.5.1.5

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
116184-++--++-+-++-+-+----

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGELGLUMANINOSorRHASACMELAMYARAOX
7069+-++----+--++------++/-
7069+-++----+--++------+-

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
116184+-+/-++----++++----+---+--+/---++--+-----------+--+--

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
116184+++++----++------+-++---+------+-+-------------+++----++---++-+--++--------+---++-----+--++++++-+-+

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinentlatitudelongitude
7069stool from diarrhoeal childBangladeshBGDAsia23.777290.3995
57234Human feces,diarrheic childBangladeshBGDAsia
67770Stool specimen of a diarrhoeal child in Bangladesh
116184Human, FecesBangladeshBGDAsia

isolation source categories

Cat1Cat2Cat3
#Infection#Patient
#Host Body Product#Gastrointestinal tract#Feces (Stool)
#Host#Human#Child

Safety information

risk assessment

@refpathogenicity humanpathogenicity animalbiosafety levelbiosafety level comment
7069yesyes2Risk group (German classification)
1161841Risk group (French classification)

Sequence information

16S sequences

  • @ref: 7069
  • description: Escherichia albertii 16S rRNA gene, type strain LMG 20976T
  • accession: AJ508775
  • length: 1494
  • database: ena
  • NCBI tax ID: 1115511

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Escherichia albertii NBRC 1077611115511.3wgspatric1115511
67770Escherichia albertii NBRC 107761 = DSM 17582GCA_000759775contigncbi1115511
66792Escherichia albertii NBRC 107761 = DSM 17582GCA_022833075contigncbi1115511

GC content

@refGC-contentmethod
706950.6
6777050.6high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileyes83.981no
flagellatedno75.303no
gram-positiveno98.763no
anaerobicno96.633no
aerobicyes86.536no
halophileno90.217no
spore-formingno95.71no
glucose-utilyes92.11no
thermophileno98.773yes
glucose-fermentyes91.791yes

External links

@ref: 7069

culture collection no.: DSM 17582, CCUG 46494, CIP 107988, LMG 20976, CCM 7160, JCM 17328, CIP 107-988, NBRC 107761

straininfo link

  • @ref: 74429
  • straininfo: 27677

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny12807204Escherichia albertii sp. nov., a diarrhoeagenic species isolated from stool specimens of Bangladeshi children.Huys G, Cnockaert M, Janda JM, Swings JInt J Syst Evol Microbiol10.1099/ijs.0.02475-02003Bacterial Typing Techniques, Bangladesh, Base Composition, Child, Child, Preschool, DNA, Ribosomal/analysis, Diarrhea/*microbiology, Escherichia/*classification/genetics/*isolation & purification/metabolism, Escherichia coli Infections/*microbiology, Feces/*microbiology, Humans, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNAPathogenicity
Phylogeny25851592Escherichia marmotae sp. nov., isolated from faeces of Marmota himalayana.Liu S, Jin D, Lan R, Wang Y, Meng Q, Dai H, Lu S, Hu S, Xu JInt J Syst Evol Microbiol10.1099/ijs.0.0002282015Animals, Base Composition, China, DNA, Bacterial/genetics, Escherichia/*classification/genetics/isolation & purification, Fatty Acids/chemistry, Feces/*microbiology, Marmota/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNAGenetics
Phylogeny36160913Characterization of the Emerging Enteropathogen Escherichia Albertii Isolated from Urine Samples of Patients Attending Sapporo Area Hospitals, Japan.Fujioka M, Yoshioka S, Ito M, Ahsan CRInt J Microbiol10.1155/2022/42360542022

Reference

@idauthorscataloguedoi/urltitle
7069Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 17582)https://www.dsmz.de/collection/catalogue/details/culture/DSM-17582
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
33868Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/5559
57234Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 46494)https://www.ccug.se/strain?id=46494
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68368Automatically annotated from API 20E
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
74429Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID27677.1StrainInfo: A central database for resolving microbial strain identifiers
116184Curators of the CIPCollection of Institut Pasteur (CIP 107988)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20107988