Strain identifier
BacDive ID: 4919
Type strain:
Species: Escherichia coli
Strain Designation: CF 1702
Strain history: <- C. Bizet, CIP <- D. Sirot, Fac. Medicine, Univ. d’Auvergne, Clermont-Ferrand, France; CF 1702
NCBI tax ID(s): 562 (species)
General
@ref: 16275
BacDive-ID: 4919
DSM-Number: 22314
keywords: Bacteria, mesophilic, antibiotic resistance, human pathogen
description: Escherichia coli CF 1702 is a mesophilic human pathogen that has multiple antibiotic resistances and was isolated from urine of a patient with urinary tract catheter.
NCBI tax id
- NCBI tax id: 562
- Matching level: species
strain history
- @ref: 16275
- history: <- C. Bizet, CIP <- D. Sirot, Fac. Medicine, Univ. d’Auvergne, Clermont-Ferrand, France; CF 1702
doi: 10.13145/bacdive4919.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Enterobacterales
- family: Enterobacteriaceae
- genus: Escherichia
- species: Escherichia coli
- full scientific name: Escherichia coli (Migula 1895) Castellani and Chalmers 1919 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Bacillus coli
@ref: 16275
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Enterobacteriales, not validated
family: Enterobacteriaceae
genus: Escherichia
species: Escherichia coli
full scientific name: Escherichia coli (Migula 1895) Castellani and Chalmers 1919
strain designation: CF 1702
type strain: no
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
16275 | LB (Luria-Bertani) MEDIUM (DSMZ Medium 381) | yes | https://mediadive.dsmz.de/medium/381 | Name: LB (Luria-Bertani) MEDIUM (DSMZ Medium 381) Composition: Agar 20.0 g/l NaCl 10.0 g/l Tryptone 10.0 g/l Yeast extract 5.0 g/l Distilled water |
39714 | MEDIUM 72- for trypto casein soja agar | yes | Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g) |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
16275 | positive | growth | 30 | mesophilic |
39714 | positive | growth | 30 | mesophilic |
Physiology and metabolism
antibiogram
- @ref: 16275
- medium: Mueller-Hinton Agar
- Penicillin G: 0
- oxacillin: 0
- ampicillin: 0
- ticarcillin: 0
- mezlocillin: 10
- cefalotin: 20
- cefazolin: 24
- cefotaxime: 32-34
- aztreonam: 10
- imipenem: 36
- tetracycline: 26
- chloramphenicol: 26-28
- gentamycin: 24
- amikacin: 24
- vancomycin: 0
- erythromycin: 8
- lincomycin: 0
- ofloxacin: 34-36
- norfloxacin: 40
- colistin: 14-16
- pipemidic acid: 30
- nitrofurantoin: 24
- bacitracin: 0
- polymyxin b: 16
- kanamycin: 36-38
- neomycin: 20
- doxycycline: 20
- ceftriaxone: 28
- clindamycin: 0
- fosfomycin: 34
- moxifloxacin: 36-38
- linezolid: 0
- nystatin: 0
- quinupristin/dalfopristin: 0
- teicoplanin: 0
- piperacillin/tazobactam: 26
compound production
@ref | compound |
---|---|
16275 | CAZ-9 beta lactamase |
16275 | TEM-46 beta lactamase |
observation
- @ref: 16275
- observation: ESBL
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
68368 | 30849 | L-arabinose | + | fermentation |
68368 | 27613 | amygdalin | - | fermentation |
68368 | 28053 | melibiose | + | fermentation |
68368 | 17992 | sucrose | - | fermentation |
68368 | 62345 | L-rhamnose | - | fermentation |
68368 | 30911 | sorbitol | - | fermentation |
68368 | 17268 | myo-inositol | - | fermentation |
68368 | 16899 | D-mannitol | + | fermentation |
68368 | 17634 | D-glucose | + | fermentation |
68368 | 5291 | gelatin | - | hydrolysis |
68368 | 27897 | tryptophan | + | energy source |
68368 | 16199 | urea | - | hydrolysis |
68368 | 16947 | citrate | - | assimilation |
68368 | 18257 | ornithine | - | degradation |
68368 | 25094 | lysine | + | degradation |
68368 | 29016 | arginine | - | hydrolysis |
metabolite production
@ref | Chebi-ID | metabolite | production |
---|---|---|---|
68368 | 15688 | acetoin | no |
68368 | 35581 | indole | yes |
68368 | 16136 | hydrogen sulfide | no |
metabolite tests
@ref | Chebi-ID | metabolite | voges-proskauer-test | indole test |
---|---|---|---|---|
68368 | 15688 | acetoin | - | |
68368 | 35581 | indole | + |
enzymes
@ref | value | activity | ec |
---|---|---|---|
68368 | cytochrome oxidase | - | 1.9.3.1 |
68368 | gelatinase | - | |
68368 | tryptophan deaminase | - | 4.1.99.1 |
68368 | urease | - | 3.5.1.5 |
68368 | ornithine decarboxylase | - | 4.1.1.17 |
68368 | lysine decarboxylase | + | 4.1.1.18 |
68368 | arginine dihydrolase | - | 3.5.3.6 |
68368 | beta-galactosidase | + | 3.2.1.23 |
API 20E
@ref | ONPG | ADH Arg | LDC Lys | ODC | CIT | H2S | URE | TDA Trp | IND | VP | GEL | GLU | MAN | INO | Sor | RHA | SAC | MEL | AMY | ARA | OX |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
16275 | + | - | + | - | - | - | - | - | + | - | - | + | + | - | - | - | - | + | - | + | - |
Isolation, sampling and environmental information
isolation
- @ref: 16275
- sample type: urine of a patient with urinary tract catheter
- country: France
- origin.country: FRA
- continent: Europe
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Infection | #Medical device | #Catheter |
#Infection | #Patient | |
#Host Body-Site | #Urogenital tract | |
#Host Body Product | #Fluids | #Urine |
Safety information
risk assessment
- @ref: 16275
- pathogenicity human: yes
- pathogenicity animal: yes
- biosafety level: 2
- biosafety level comment: Risk group (German classification)
External links
@ref: 16275
culture collection no.: DSM 22314, CIP 105871
straininfo link
- @ref: 74417
- straininfo: 68444
Reference
@id | authors | catalogue | doi/url | title |
---|---|---|---|---|
16275 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 22314) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-22314 | |
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
39714 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/17938 | ||
68368 | Automatically annotated from API 20E | |||
74417 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID68444.1 | StrainInfo: A central database for resolving microbial strain identifiers |