Strain identifier

BacDive ID: 4918

Type strain: No

Species: Escherichia coli

Strain Designation: GR102

Strain history: <- C. Bizet, CIP <- D. Sirot, Fac. Medicine, Univ. d’Auvergne, Clermont-Ferrand, France; GR 102

NCBI tax ID(s): 562 (species)

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General

@ref: 16274

BacDive-ID: 4918

DSM-Number: 22313

keywords: Bacteria, mesophilic, antibiotic resistance, human pathogen

description: Escherichia coli GR102 is a mesophilic human pathogen that has multiple antibiotic resistances and was isolated from feces of a leukemic patient.

NCBI tax id

  • NCBI tax id: 562
  • Matching level: species

strain history

  • @ref: 16274
  • history: <- C. Bizet, CIP <- D. Sirot, Fac. Medicine, Univ. d’Auvergne, Clermont-Ferrand, France; GR 102

doi: 10.13145/bacdive4918.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Enterobacteriaceae
  • genus: Escherichia
  • species: Escherichia coli
  • full scientific name: Escherichia coli (Migula 1895) Castellani and Chalmers 1919 (Approved Lists 1980)

  • synonyms

    • @ref: 20215
    • synonym: Bacillus coli

@ref: 16274

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacteriales, not validated

family: Enterobacteriaceae

genus: Escherichia

species: Escherichia coli

full scientific name: Escherichia coli (Migula 1895) Castellani and Chalmers 1919

strain designation: GR102

type strain: no

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
16274LB (Luria-Bertani) MEDIUM (DSMZ Medium 381)yeshttps://mediadive.dsmz.de/medium/381Name: LB (Luria-Bertani) MEDIUM (DSMZ Medium 381) Composition: Agar 20.0 g/l NaCl 10.0 g/l Tryptone 10.0 g/l Yeast extract 5.0 g/l Distilled water
32869MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)

culture temp

@refgrowthtypetemperaturerange
16274positivegrowth30mesophilic
32869positivegrowth30mesophilic

Physiology and metabolism

antibiogram

  • @ref: 16274
  • medium: Mueller-Hinton Agar
  • Penicillin G: 0
  • oxacillin: 0
  • ampicillin: 0
  • ticarcillin: 0
  • mezlocillin: 8
  • cefalotin: 10
  • cefazolin: 16
  • cefotaxime: 26
  • aztreonam: 34-36
  • imipenem: 34
  • tetracycline: 0
  • chloramphenicol: 0
  • gentamycin: 12
  • amikacin: 22-24
  • vancomycin: 0
  • erythromycin: 8
  • lincomycin: 0
  • ofloxacin: 34
  • norfloxacin: 38
  • colistin: 16
  • pipemidic acid: 28
  • nitrofurantoin: 20-22
  • bacitracin: 0
  • polymyxin b: 16
  • kanamycin: 30
  • neomycin: 18
  • doxycycline: 0
  • ceftriaxone: 28
  • clindamycin: 0
  • fosfomycin: 34-36
  • moxifloxacin: 32
  • linezolid: 0
  • nystatin: 0
  • quinupristin/dalfopristin: 0
  • teicoplanin: 0
  • piperacillin/tazobactam: 24

compound production

@refcompound
16274CMT-1 beta lactamase
16274TEM-50 beta lactamase

observation

  • @ref: 16274
  • observation: ESBL

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836830849L-arabinose+fermentation
6836827613amygdalin-fermentation
6836828053melibiose+fermentation
6836817992sucrose+fermentation
6836862345L-rhamnose+fermentation
6836830911sorbitol+fermentation
6836817268myo-inositol-fermentation
6836816899D-mannitol+fermentation
6836817634D-glucose+fermentation
683685291gelatin-hydrolysis
6836827897tryptophan+energy source
6836816199urea-hydrolysis
6836816947citrate-assimilation
6836818257ornithine+degradation
6836825094lysine+degradation
6836829016arginine-hydrolysis

metabolite production

@refChebi-IDmetaboliteproduction
6836815688acetoinno
6836835581indoleyes
6836816136hydrogen sulfideno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
6836815688acetoin-
6836835581indole+

enzymes

@refvalueactivityec
68368cytochrome oxidase-1.9.3.1
68368gelatinase-
68368tryptophan deaminase-4.1.99.1
68368urease-3.5.1.5
68368ornithine decarboxylase+4.1.1.17
68368lysine decarboxylase+4.1.1.18
68368arginine dihydrolase-3.5.3.6
68368beta-galactosidase+3.2.1.23

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGELGLUMANINOSorRHASACMELAMYARAOX
16274+-++----+--++-++++-+-

Isolation, sampling and environmental information

isolation

  • @ref: 16274
  • sample type: feces of a leukemic patient
  • country: France
  • origin.country: FRA
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Infection#Patient
#Host Body Product#Gastrointestinal tract#Feces (Stool)

Safety information

risk assessment

  • @ref: 16274
  • pathogenicity human: yes
  • pathogenicity animal: yes
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

External links

@ref: 16274

culture collection no.: DSM 22313, CIP 105870

straininfo link

  • @ref: 74416
  • straininfo: 68443

Reference

@idauthorscataloguedoi/urltitle
16274Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 22313)https://www.dsmz.de/collection/catalogue/details/culture/DSM-22313
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
32869Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/17937
68368Automatically annotated from API 20E
74416Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID68443.1StrainInfo: A central database for resolving microbial strain identifiers