Strain identifier

BacDive ID: 4916

Type strain: No

Species: Escherichia coli

Strain Designation: 824-DH

Strain history: <- C. Bizet, CIP <- G. Prats, Hospital de Sant Pau, Barcelona, Spain; 824-DH

NCBI tax ID(s): 562 (species)

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General

@ref: 16272

BacDive-ID: 4916

DSM-Number: 22311

keywords: Bacteria, mesophilic, antibiotic resistance, human pathogen

description: Escherichia coli 824-DH is a mesophilic human pathogen that has multiple antibiotic resistances and was isolated from human blood.

NCBI tax id

  • NCBI tax id: 562
  • Matching level: species

strain history

  • @ref: 16272
  • history: <- C. Bizet, CIP <- G. Prats, Hospital de Sant Pau, Barcelona, Spain; 824-DH

doi: 10.13145/bacdive4916.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Enterobacteriaceae
  • genus: Escherichia
  • species: Escherichia coli
  • full scientific name: Escherichia coli (Migula 1895) Castellani and Chalmers 1919 (Approved Lists 1980)

  • synonyms

    • @ref: 20215
    • synonym: Bacillus coli

@ref: 16272

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacteriales, not validated

family: Enterobacteriaceae

genus: Escherichia

species: Escherichia coli

full scientific name: Escherichia coli (Migula 1895) Castellani and Chalmers 1919

strain designation: 824-DH

type strain: no

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
16272LB (Luria-Bertani) MEDIUM (DSMZ Medium 381)yeshttps://mediadive.dsmz.de/medium/381Name: LB (Luria-Bertani) MEDIUM (DSMZ Medium 381) Composition: Agar 20.0 g/l NaCl 10.0 g/l Tryptone 10.0 g/l Yeast extract 5.0 g/l Distilled water
41756MEDIUM 29- Brain heart agaryesDistilled water make up to (1000.000 ml);Brain heart infusion agar (52.000 g)

culture temp

@refgrowthtypetemperaturerange
16272positivegrowth30mesophilic
41756positivegrowth30mesophilic

Physiology and metabolism

antibiogram

  • @ref: 16272
  • medium: Mueller-Hinton Agar
  • Penicillin G: 0
  • oxacillin: 0
  • ampicillin: 0
  • ticarcillin: 0
  • mezlocillin: 0
  • cefalotin: 10
  • cefazolin: 14-16
  • cefotaxime: 36-38
  • aztreonam: 34
  • imipenem: 34-36
  • tetracycline: 28
  • chloramphenicol: 24
  • gentamycin: 20
  • amikacin: 22
  • vancomycin: 0
  • erythromycin: 12
  • lincomycin: 0
  • ofloxacin: 34
  • norfloxacin: 34-36
  • colistin: 14-16
  • pipemidic acid: 28
  • nitrofurantoin: 24-26
  • bacitracin: 0
  • polymyxin b: 14-16
  • kanamycin: 34
  • neomycin: 18
  • doxycycline: 26-28
  • ceftriaxone: 34
  • clindamycin: 0
  • fosfomycin: 34-36
  • moxifloxacin: 34
  • linezolid: 0
  • nystatin: 0
  • quinupristin/dalfopristin: 0
  • teicoplanin: 0
  • piperacillin/tazobactam: 8

compound production

  • @ref: 16272
  • compound: SHV-1 beta lactamase

observation

  • @ref: 16272
  • observation: ESBL

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836830849L-arabinose+fermentation
6836827613amygdalin-fermentation
6836828053melibiose-fermentation
6836817992sucrose-fermentation
6836862345L-rhamnose+fermentation
6836830911sorbitol+fermentation
6836817268myo-inositol-fermentation
6836816899D-mannitol+fermentation
6836817634D-glucose+fermentation
683685291gelatin-hydrolysis
6836827897tryptophan+energy source
6836816199urea-hydrolysis
6836816947citrate-assimilation
6836818257ornithine+degradation
6836825094lysine+degradation
6836829016arginine-hydrolysis

metabolite production

@refChebi-IDmetaboliteproduction
6836815688acetoinno
6836835581indoleyes
6836816136hydrogen sulfideno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
6836815688acetoin-
6836835581indole+

enzymes

@refvalueactivityec
68368cytochrome oxidase-1.9.3.1
68368gelatinase-
68368tryptophan deaminase-4.1.99.1
68368urease-3.5.1.5
68368ornithine decarboxylase+4.1.1.17
68368lysine decarboxylase+4.1.1.18
68368arginine dihydrolase-3.5.3.6
68368beta-galactosidase+3.2.1.23

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGELGLUMANINOSorRHASACMELAMYARAOX
16272+-++----+--++-++---+-

Isolation, sampling and environmental information

isolation

  • @ref: 16272
  • sample type: human blood
  • geographic location: Barcelona
  • country: Spain
  • origin.country: ESP
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Host#Human
#Host Body Product#Fluids#Blood

Safety information

risk assessment

  • @ref: 16272
  • pathogenicity human: yes
  • pathogenicity animal: yes
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

External links

@ref: 16272

culture collection no.: DSM 22311, CIP 105836

straininfo link

  • @ref: 74414
  • straininfo: 68434

Reference

@idauthorscataloguedoi/urltitle
16272Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 22311)https://www.dsmz.de/collection/catalogue/details/culture/DSM-22311
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
41756Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/17899
68368Automatically annotated from API 20E
74414Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID68434.1StrainInfo: A central database for resolving microbial strain identifiers