Strain identifier

BacDive ID: 4909

Type strain: No

Species: Escherichia coli

Strain Designation: 17, K12 W-3001, Lederberg W3001, W 3001, W3001

Strain history: <- IMET <- W. Fleck <- E.M. Lederberg, W 3001. Derived from E. coli strain K12

NCBI tax ID(s): 562 (species)

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General

@ref: 12510

BacDive-ID: 4909

DSM-Number: 46295

keywords: genome sequence, Bacteria, mesophilic

description: Escherichia coli 17 is a mesophilic bacterium of the family Enterobacteriaceae.

NCBI tax id

  • NCBI tax id: 562
  • Matching level: species

strain history

  • @ref: 12510
  • history: <- IMET <- W. Fleck <- E.M. Lederberg, W 3001. Derived from E. coli strain K12

doi: 10.13145/bacdive4909.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Enterobacteriaceae
  • genus: Escherichia
  • species: Escherichia coli
  • full scientific name: Escherichia coli (Migula 1895) Castellani and Chalmers 1919 (Approved Lists 1980)
  • synonyms

    • @ref: 20215
    • synonym: Bacillus coli

@ref: 12510

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacteriales, not validated

family: Enterobacteriaceae

genus: Escherichia

species: Escherichia coli

full scientific name: Escherichia coli (Migula 1895) Castellani and Chalmers 1919

strain designation: 17, K12 W-3001, Lederberg W3001, W 3001, W3001

type strain: no

Culture and growth conditions

culture medium

  • @ref: 12510
  • name: ORGANIC MEDIUM 79 (DSMZ Medium 426)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/426
  • composition: Name: ORGANIC MEDIUM 79 (DSMZ Medium 426) Composition: Agar 15.0 g/l Peptone 10.0 g/l Dextrose 10.0 g/l NaCl 6.0 g/l Yeast extract 2.0 g/l Casein peptone 2.0 g/l Distilled water

culture temp

  • @ref: 12510
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836830849L-arabinose+fermentation
6836827613amygdalin-fermentation
6836828053melibiose+fermentation
6836817992sucrose-fermentation
6836862345L-rhamnose+fermentation
6836830911sorbitol+fermentation
6836817268myo-inositol-fermentation
6836816899D-mannitol+fermentation
6836817634D-glucose+fermentation
683685291gelatin-hydrolysis
6836827897tryptophan+energy source
6836816199urea-hydrolysis
6836816947citrate-assimilation
6836818257ornithine-degradation
6836825094lysine+degradation
6836829016arginine-hydrolysis

metabolite production

@refChebi-IDmetaboliteproduction
6836815688acetoinno
6836835581indoleyes
6836816136hydrogen sulfideno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
6836815688acetoin-
6836835581indole+

enzymes

@refvalueactivityec
68368gelatinase-
68368tryptophan deaminase-4.1.99.1
68368urease-3.5.1.5
68368ornithine decarboxylase-4.1.1.17
68368lysine decarboxylase+4.1.1.18
68368arginine dihydrolase-3.5.3.6
68368beta-galactosidase+3.2.1.23

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGELGLUMANINOSorRHASACMELAMYARA
12510+-+-----+--++-++-+-+

Safety information

risk assessment

  • @ref: 12510
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Escherichia coli 17GCA_020422845contigncbi562
66792Escherichia coli 17GCA_900166755scaffoldncbi562
66792Escherichia coli 17GCA_916159655contigncbi562
66792Escherichia coli 17GCA_013185805contigncbi562
66792Escherichia coli 17GCA_002080645scaffoldncbi562
66792Escherichia coli 17GCA_024642945contigncbi562

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileyes89.151no
flagellatedno59.886no
gram-positiveno98.171no
anaerobicno94.63no
aerobicyes83.472no
halophileno91.693no
spore-formingno93.783no
thermophileno99.076yes
glucose-utilyes93.91no
glucose-fermentyes92.731no

External links

@ref: 12510

culture collection no.: DSM 46295, ATCC 15153, IMET 10942, NCIB 9551

straininfo link

  • @ref: 74407
  • straininfo: 36284

Reference

@idauthorscataloguedoi/urltitle
12510Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 46295)https://www.dsmz.de/collection/catalogue/details/culture/DSM-46295
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68368Automatically annotated from API 20E
74407Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID36284.1StrainInfo: A central database for resolving microbial strain identifiers