Strain identifier
BacDive ID: 4906
Type strain: 
Species: Escherichia coli
Strain Designation: T6
Strain history: <- ATCC <- L.W. Parr, T 6
NCBI tax ID(s): 562 (species)
General
@ref: 9114
BacDive-ID: 4906
DSM-Number: 30082
keywords: genome sequence, Bacteria, mesophilic, human pathogen
description: Escherichia coli T6 is a mesophilic human pathogen of the family Enterobacteriaceae.
NCBI tax id
- NCBI tax id: 562
- Matching level: species
strain history
- @ref: 9114
- history: <- ATCC <- L.W. Parr, T 6
doi: 10.13145/bacdive4906.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Enterobacterales
- family: Enterobacteriaceae
- genus: Escherichia
- species: Escherichia coli
- full scientific name: Escherichia coli (Migula 1895) Castellani and Chalmers 1919 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Bacillus coli
@ref: 9114
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Enterobacteriales, not validated
family: Enterobacteriaceae
genus: Escherichia
species: Escherichia coli
full scientific name: Escherichia coli (Migula 1895) Castellani and Chalmers 1919
strain designation: T6
type strain: no
Culture and growth conditions
culture medium
- @ref: 9114
- name: NUTRIENT AGAR (DSMZ Medium 1)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1
- composition: Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
culture temp
- @ref: 9114
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Safety information
risk assessment
- @ref: 9114
- pathogenicity human: yes
- pathogenicity animal: yes
- biosafety level: 2
- biosafety level comment: Risk group (German classification)
Sequence information
Genome sequences
- @ref: 66792
- description: Escherichia coli t6
- accession: GCA_009761665
- assembly level: contig
- database: ncbi
- NCBI tax ID: 562
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | yes | 89.238 | no |
| flagellated | no | 55.334 | no |
| gram-positive | no | 98.044 | no |
| anaerobic | no | 95.461 | no |
| aerobic | yes | 85.697 | no |
| halophile | no | 91.623 | no |
| spore-forming | no | 93.958 | no |
| glucose-util | yes | 93.216 | no |
| thermophile | no | 99.485 | no |
| glucose-ferment | yes | 93.702 | no |
External links
@ref: 9114
culture collection no.: DSM 30082, ATCC 12814
straininfo link
- @ref: 74404
- straininfo: 46997
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 9114 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 30082) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-30082 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 74404 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID46997.1 | StrainInfo: A central database for resolving microbial strain identifiers |