Strain identifier
BacDive ID: 490
Type strain:
Species: Marinobacter goseongensis
Strain Designation: En6
Strain history: <- ZX Quan, KRIBB
NCBI tax ID(s): 453838 (species)
General
@ref: 8106
BacDive-ID: 490
DSM-Number: 19471
keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, rod-shaped
description: Marinobacter goseongensis En6 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from coastal sea water at a depth of 100 m.
NCBI tax id
- NCBI tax id: 453838
- Matching level: species
strain history
@ref | history |
---|---|
8106 | <- S. W. Roh, Korea Res. Inst. Biosci. & Biotechnol. (KRIBB), Taejon, South Korea; En6 |
67771 | <- ZX Quan, KRIBB |
doi: 10.13145/bacdive490.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Alteromonadales
- family: Alteromonadaceae
- genus: Marinobacter
- species: Marinobacter goseongensis
- full scientific name: Marinobacter goseongensis Roh et al. 2008
@ref: 8106
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Alteromonadales
family: Alteromonadaceae
genus: Marinobacter
species: Marinobacter goseongensis
full scientific name: Marinobacter goseongensis Roh et al. 2008
strain designation: En6
type strain: yes
Morphology
cell morphology
@ref | gram stain | cell length | cell width | cell shape | motility |
---|---|---|---|---|---|
32457 | negative | 1.6-2 µm | 0.5-0.8 µm | rod-shaped | no |
67771 | negative |
pigmentation
- @ref: 32457
- production: yes
Culture and growth conditions
culture medium
- @ref: 8106
- name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
- growth: yes
- link: https://mediadive.dsmz.de/medium/514
- composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
8106 | positive | growth | 28 | mesophilic |
32457 | positive | growth | 10-37 | |
32457 | positive | optimum | 25-30 | mesophilic |
67771 | positive | growth | 30 | mesophilic |
culture pH
@ref | ability | type | pH | PH range |
---|---|---|---|---|
32457 | positive | growth | 5.3-9.3 | alkaliphile |
32457 | positive | optimum | 7.5 |
Physiology and metabolism
oxygen tolerance
@ref | oxygen tolerance |
---|---|
32457 | aerobe |
67771 | aerobe |
spore formation
- @ref: 32457
- spore formation: no
halophily
@ref | salt | growth | tested relation | concentration |
---|---|---|---|---|
32457 | NaCl | positive | growth | 01-25 % |
32457 | NaCl | positive | optimum | 04-05 % |
observation
- @ref: 32457
- observation: aggregates in chains
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
32457 | 30089 | acetate | + | carbon source |
32457 | 29987 | glutamate | + | carbon source |
32457 | 24996 | lactate | + | carbon source |
32457 | 51850 | methyl pyruvate | + | carbon source |
32457 | 53423 | tween 40 | + | carbon source |
32457 | 53426 | tween 80 | + | carbon source |
enzymes
@ref | value | activity | ec |
---|---|---|---|
32457 | catalase | + | 1.11.1.6 |
32457 | cytochrome oxidase | + | 1.9.3.1 |
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent |
---|---|---|---|---|---|
8106 | coastal sea water at a depth of 100 m | East Sea | Republic of Korea | KOR | Asia |
67771 | From sea water | Goseong, East Sea | Republic of Korea | KOR | Asia |
isolation source categories
- Cat1: #Environmental
- Cat2: #Aquatic
- Cat3: #Marine
taxonmaps
- @ref: 69479
- File name: preview.99_52486.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_89;96_1317;97_1564;98_5513;99_52486&stattab=map
- Last taxonomy: Marinobacter
- 16S sequence: EF660754
- Sequence Identity:
- Total samples: 1287
- soil counts: 92
- aquatic counts: 1081
- animal counts: 99
- plant counts: 15
Safety information
risk assessment
- @ref: 8106
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 8106
- description: Marinobacter goseongensis strain En6 16S ribosomal RNA gene, partial sequence
- accession: EF660754
- length: 1436
- database: ena
- NCBI tax ID: 453838
Genome sequences
- @ref: 66792
- description: Marinobacter goseongensis KCTC 12515
- accession: GCA_023156235
- assembly level: contig
- database: ncbi
- NCBI tax ID: 453838
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
flagellated | yes | 73.324 | yes |
gram-positive | no | 98.978 | yes |
anaerobic | no | 96.379 | yes |
aerobic | yes | 85.478 | yes |
halophile | yes | 78.756 | no |
spore-forming | no | 96.135 | yes |
motile | yes | 89.634 | no |
glucose-ferment | no | 89.802 | no |
thermophile | no | 99.451 | yes |
glucose-util | no | 59.303 | no |
External links
@ref: 8106
culture collection no.: DSM 19471, KCTC 12515
straininfo link
- @ref: 70169
- straininfo: 407513
literature
- topic: Phylogeny
- Pubmed-ID: 19060073
- title: Marinobacter goseongensis sp. nov., from seawater.
- authors: Roh SW, Quan ZX, Nam YD, Chang HW, Kim KH, Rhee SK, Oh HM, Jeon CO, Yoon JH, Bae JW
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.65522-0
- year: 2008
- mesh: Fatty Acids/analysis, Korea, Marinobacter/chemistry/*classification/genetics/*physiology, Molecular Sequence Data, Oceans and Seas, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Homology, Nucleic Acid, Species Specificity
- topic2: Genetics
Reference
@id | authors | catalogue | doi/url | title | ID_cross_reference | pubmed |
---|---|---|---|---|---|---|
8106 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19471) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-19471 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
32457 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 28679 | 28776041 | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
67771 | Curators of the KCTC | https://kctc.kribb.re.kr/En/Kctc | ||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
70169 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID407513.1 | StrainInfo: A central database for resolving microbial strain identifiers |