Strain identifier

BacDive ID: 490

Type strain: Yes

Species: Marinobacter goseongensis

Strain Designation: En6

Strain history: <- ZX Quan, KRIBB

NCBI tax ID(s): 453838 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 8106

BacDive-ID: 490

DSM-Number: 19471

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, rod-shaped

description: Marinobacter goseongensis En6 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from coastal sea water at a depth of 100 m.

NCBI tax id

  • NCBI tax id: 453838
  • Matching level: species

strain history

@refhistory
8106<- S. W. Roh, Korea Res. Inst. Biosci. & Biotechnol. (KRIBB), Taejon, South Korea; En6
67771<- ZX Quan, KRIBB

doi: 10.13145/bacdive490.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Alteromonadales
  • family: Alteromonadaceae
  • genus: Marinobacter
  • species: Marinobacter goseongensis
  • full scientific name: Marinobacter goseongensis Roh et al. 2008

@ref: 8106

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Alteromonadales

family: Alteromonadaceae

genus: Marinobacter

species: Marinobacter goseongensis

full scientific name: Marinobacter goseongensis Roh et al. 2008

strain designation: En6

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotility
32457negative1.6-2 µm0.5-0.8 µmrod-shapedno
67771negative

pigmentation

  • @ref: 32457
  • production: yes

Culture and growth conditions

culture medium

  • @ref: 8106
  • name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/514
  • composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
8106positivegrowth28mesophilic
32457positivegrowth10-37
32457positiveoptimum25-30mesophilic
67771positivegrowth30mesophilic

culture pH

@refabilitytypepHPH range
32457positivegrowth5.3-9.3alkaliphile
32457positiveoptimum7.5

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
32457aerobe
67771aerobe

spore formation

  • @ref: 32457
  • spore formation: no

halophily

@refsaltgrowthtested relationconcentration
32457NaClpositivegrowth01-25 %
32457NaClpositiveoptimum04-05 %

observation

  • @ref: 32457
  • observation: aggregates in chains

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3245730089acetate+carbon source
3245729987glutamate+carbon source
3245724996lactate+carbon source
3245751850methyl pyruvate+carbon source
3245753423tween 40+carbon source
3245753426tween 80+carbon source

enzymes

@refvalueactivityec
32457catalase+1.11.1.6
32457cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
8106coastal sea water at a depth of 100 mEast SeaRepublic of KoreaKORAsia
67771From sea waterGoseong, East SeaRepublic of KoreaKORAsia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic
  • Cat3: #Marine

taxonmaps

  • @ref: 69479
  • File name: preview.99_52486.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_89;96_1317;97_1564;98_5513;99_52486&stattab=map
  • Last taxonomy: Marinobacter
  • 16S sequence: EF660754
  • Sequence Identity:
  • Total samples: 1287
  • soil counts: 92
  • aquatic counts: 1081
  • animal counts: 99
  • plant counts: 15

Safety information

risk assessment

  • @ref: 8106
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 8106
  • description: Marinobacter goseongensis strain En6 16S ribosomal RNA gene, partial sequence
  • accession: EF660754
  • length: 1436
  • database: ena
  • NCBI tax ID: 453838

Genome sequences

  • @ref: 66792
  • description: Marinobacter goseongensis KCTC 12515
  • accession: GCA_023156235
  • assembly level: contig
  • database: ncbi
  • NCBI tax ID: 453838

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
flagellatedyes73.324yes
gram-positiveno98.978yes
anaerobicno96.379yes
aerobicyes85.478yes
halophileyes78.756no
spore-formingno96.135yes
motileyes89.634no
glucose-fermentno89.802no
thermophileno99.451yes
glucose-utilno59.303no

External links

@ref: 8106

culture collection no.: DSM 19471, KCTC 12515

straininfo link

  • @ref: 70169
  • straininfo: 407513

literature

  • topic: Phylogeny
  • Pubmed-ID: 19060073
  • title: Marinobacter goseongensis sp. nov., from seawater.
  • authors: Roh SW, Quan ZX, Nam YD, Chang HW, Kim KH, Rhee SK, Oh HM, Jeon CO, Yoon JH, Bae JW
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.65522-0
  • year: 2008
  • mesh: Fatty Acids/analysis, Korea, Marinobacter/chemistry/*classification/genetics/*physiology, Molecular Sequence Data, Oceans and Seas, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Homology, Nucleic Acid, Species Specificity
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
8106Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19471)https://www.dsmz.de/collection/catalogue/details/culture/DSM-19471
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
32457Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2867928776041
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
70169Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID407513.1StrainInfo: A central database for resolving microbial strain identifiers