Strain identifier

BacDive ID: 489

Type strain: Yes

Species: Marinobacter salsuginis

Strain Designation: SD-14B

Strain history: CIP <- 2008, DSMZ <- A.G.L. Antunes, Coimbra Univ., Coimbra, Portugal: strain SD-14B

NCBI tax ID(s): 418719 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 7518

BacDive-ID: 489

DSM-Number: 18347

keywords: genome sequence, 16S sequence, Bacteria, facultative anaerobe, mesophilic, Gram-negative, motile, rod-shaped

description: Marinobacter salsuginis SD-14B is a facultative anaerobe, mesophilic, Gram-negative bacterium that was isolated from brine–seawater interface.

NCBI tax id

  • NCBI tax id: 418719
  • Matching level: species

strain history

@refhistory
7518<- A. G. L. Antunes, Univ. Coimbra, Portugal; SD-14B <- A. G. L. Antunes and M. Taborda
122406CIP <- 2008, DSMZ <- A.G.L. Antunes, Coimbra Univ., Coimbra, Portugal: strain SD-14B

doi: 10.13145/bacdive489.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Alteromonadales
  • family: Alteromonadaceae
  • genus: Marinobacter
  • species: Marinobacter salsuginis
  • full scientific name: Marinobacter salsuginis Antunes et al. 2007

@ref: 7518

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Alteromonadales

family: Alteromonadaceae

genus: Marinobacter

species: Marinobacter salsuginis

full scientific name: Marinobacter salsuginis Antunes et al. 2007

strain designation: SD-14B

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotility
32039negative3 µm1 µmrod-shapedyes
122406negativerod-shapedyes

pigmentation

  • @ref: 32039
  • production: no

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
7518BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)yeshttps://mediadive.dsmz.de/medium/514Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
36402Marine agar (MA)yesDistilled water make up to (1000.000 ml);Marine agar (55.100 g)
122406CIP Medium 13yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=13

culture temp

@refgrowthtypetemperaturerange
7518positivegrowth28mesophilic
32039positivegrowth10-45
32039positiveoptimum36mesophilic
36402positivegrowth30mesophilic

culture pH

@refabilitytypepHPH range
32039positivegrowth6.5-9.5alkaliphile
32039positiveoptimum7.75

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
32039facultative anaerobe
122406facultative anaerobe

spore formation

  • @ref: 32039
  • spore formation: no

halophily

@refsaltgrowthtested relationconcentration
32039NaClpositivegrowth01-20 %
32039NaClpositiveoptimum5 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
32039581435-dehydro-D-gluconate+carbon source
3203930089acetate+carbon source
3203916449alanine+carbon source
3203928757fructose+carbon source
320395291gelatin+carbon source
3203917234glucose+carbon source
3203929987glutamate+carbon source
3203917754glycerol+carbon source
3203924996lactate+carbon source
3203925115malate+carbon source
32039506227N-acetylglucosamine+carbon source
3203928044phenylalanine+carbon source
3203926271proline+carbon source
3203915361pyruvate+carbon source
3203930031succinate+carbon source
3203953424tween 20+carbon source
3203953423tween 40+carbon source
3203953426tween 80+carbon source
3203917632nitrate+reduction
12240617632nitrate+reduction
12240616301nitrite-reduction

metabolite production

  • @ref: 122406
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
32039acid phosphatase+3.1.3.2
32039alkaline phosphatase+3.1.3.1
32039catalase+1.11.1.6
32039gelatinase+
32039cytochrome oxidase+1.9.3.1
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382beta-glucosidase-3.2.1.21
68382alpha-glucosidase-3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase-3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase+
68382acid phosphatase+3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin-3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase+
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)+
68382esterase lipase (C 8)+
68382esterase (C 4)-
68382alkaline phosphatase+3.1.3.1
122406oxidase+
122406catalase+1.11.1.6
122406urease-3.5.1.5

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
122406-+-++++---++-----+--

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
7518brine–seawater interfaceShaban Deep, Red SeaSaudi ArabiaSAUAsia
122406Environment, Brine-seawater interfaceShaban Deep, Red SeaSaudi ArabiaSAUAsia

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Marine
#Condition#Saline

taxonmaps

  • @ref: 69479
  • File name: preview.99_14463.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_89;96_1317;97_1564;98_10960;99_14463&stattab=map
  • Last taxonomy: Marinobacter salsuginis subclade
  • 16S sequence: EF028328
  • Sequence Identity:
  • Total samples: 1044
  • soil counts: 42
  • aquatic counts: 943
  • animal counts: 50
  • plant counts: 9

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
75181Risk group (German classification)
1224061Risk group (French classification)

Sequence information

16S sequences

  • @ref: 7518
  • description: Marinobacter salsuginis strain SD-14B 16S ribosomal RNA gene, partial sequence
  • accession: EF028328
  • length: 1487
  • database: ena
  • NCBI tax ID: 1260625

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Marinobacter salsuginis SD-14BGCA_004936695contigncbi1260625
66792Marinobacter salsuginis SD-14B1260625.5wgspatric1260625
66792Marinobacter salsuginis SD-14B2516653033draftimg1260625

GC content

  • @ref: 7518
  • GC-content: 55.9

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileyes92.503yes
gram-positiveno98.675yes
anaerobicno98.23yes
aerobicyes78.228yes
halophileyes85.086no
spore-formingno96.363yes
thermophileno98.716no
glucose-utilyes51.792no
flagellatedyes89.266no
glucose-fermentno90.121no

External links

@ref: 7518

culture collection no.: DSM 18347, CIP 109893, LMG 23697

straininfo link

  • @ref: 70168
  • straininfo: 292702

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny17473254Marinobacter salsuginis sp. nov., isolated from the brine-seawater interface of the Shaban Deep, Red Sea.Antunes A, Franca L, Rainey FA, Huber R, Nobre MF, Edwards KJ, da Costa MSInt J Syst Evol Microbiol10.1099/ijs.0.64862-02007Anaerobiosis, Bacterial Typing Techniques, Base Composition, Carbohydrate Metabolism, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Flagella, Genes, rRNA, Hydrogen-Ion Concentration, Indian Ocean, Marinobacter/*classification/genetics/*isolation & purification/physiology, Molecular Sequence Data, Movement, Nitrates/metabolism, Nitrogen/metabolism, Oxidation-Reduction, Phylogeny, Pigments, Biological/biosynthesis, Quinones/analysis, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, Sodium Chloride/metabolism, TemperatureMetabolism
Phylogeny27902222Marinobacter salinus sp. nov., a moderately halophilic bacterium isolated from a tidal flat environment.Rani S, Koh HW, Kim H, Rhee SK, Park SJInt J Syst Evol Microbiol10.1099/ijsem.0.0015872017Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Marinobacter/*classification/genetics/isolation & purification, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Seawater/*microbiology, Sequence Analysis, DNA, Ubiquinone/chemistryTranscriptome
Phylogeny27902258Marinobacter halotolerans sp. nov., a halophilic bacterium isolated from a saltern crystallizing pond.Kim JO, Lee HJ, Han SI, Whang KSInt J Syst Evol Microbiol10.1099/ijsem.0.0016532017Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Marinobacter/*classification/genetics/isolation & purification, Nucleic Acid Hybridization, *Phylogeny, Ponds/*microbiology, RNA, Ribosomal, 16S/genetics, Republic of Korea, *Salinity, Sequence Analysis, DNA, Ubiquinone/chemistryTranscriptome

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
7518Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 18347)https://www.dsmz.de/collection/catalogue/details/culture/DSM-18347
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
32039Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2828928776041
36402Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/7688
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
70168Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID292702.1StrainInfo: A central database for resolving microbial strain identifiers
122406Curators of the CIPCollection of Institut Pasteur (CIP 109893)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20109893