Strain identifier

BacDive ID: 4889

Type strain: No

Species: Escherichia coli

Strain Designation: 13706/60

Strain history: <- L.W. Sinton, NZRM

NCBI tax ID(s): 562 (species)

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General

@ref: 4650

BacDive-ID: 4889

DSM-Number: 12242

keywords: genome sequence, Bacteria, mesophilic, human pathogen

description: Escherichia coli 13706/60 is a mesophilic human pathogen of the family Enterobacteriaceae.

NCBI tax id

  • NCBI tax id: 562
  • Matching level: species

strain history

  • @ref: 4650
  • history: <- L.W. Sinton, NZRM

doi: 10.13145/bacdive4889.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Enterobacteriaceae
  • genus: Escherichia
  • species: Escherichia coli
  • full scientific name: Escherichia coli (Migula 1895) Castellani and Chalmers 1919 (Approved Lists 1980)
  • synonyms

    • @ref: 20215
    • synonym: Bacillus coli

@ref: 4650

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacteriales, not validated

family: Enterobacteriaceae

genus: Escherichia

species: Escherichia coli

full scientific name: Escherichia coli (Migula 1895) Castellani and Chalmers 1919

strain designation: 13706/60

type strain: no

Culture and growth conditions

culture medium

  • @ref: 4650
  • name: BHI MEDIUM (DSMZ Medium 215)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/215
  • composition: Name: BHI MEDIUM (DSMZ Medium 215) Composition: Brain heart infusion 37.0 g/l Distilled water

culture temp

  • @ref: 4650
  • growth: positive
  • type: growth
  • temperature: 35
  • range: mesophilic

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836830849L-arabinose+fermentation
6836827613amygdalin-fermentation
6836828053melibiose+fermentation
6836817992sucrose-fermentation
6836862345L-rhamnose+fermentation
6836830911sorbitol+fermentation
6836817268myo-inositol-fermentation
6836816899D-mannitol+fermentation
6836817634D-glucose+fermentation
683685291gelatin-hydrolysis
6836827897tryptophan+energy source
6836816199urea-hydrolysis
6836816947citrate-assimilation
6836818257ornithine-degradation
6836825094lysine-degradation
6836829016arginine-hydrolysis

metabolite production

@refChebi-IDmetaboliteproduction
6836815688acetoinno
6836835581indoleyes
6836816136hydrogen sulfideno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
6836815688acetoin-
6836835581indole+

enzymes

@refvalueactivityec
68368cytochrome oxidase-1.9.3.1
68368gelatinase-
68368tryptophan deaminase-4.1.99.1
68368urease-3.5.1.5
68368ornithine decarboxylase-4.1.1.17
68368lysine decarboxylase-4.1.1.18
68368arginine dihydrolase-3.5.3.6
68368beta-galactosidase+3.2.1.23

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGELGLUMANINOSorRHASACMELAMYARAOX
4650+-------+--++-++-+-+-

Safety information

risk assessment

  • @ref: 4650
  • pathogenicity human: yes
  • pathogenicity animal: yes
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Escherichia coli DSM 12242GCA_007844855contigncbi562
66792Escherichia coli strain DSM 12242562.50594wgspatric562

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
gram-positiveno98.129no
anaerobicno95.015no
halophileno90.309no
spore-formingno94.376no
glucose-utilyes93.403no
flagellatedno61.567no
thermophileno98.989no
motileyes89.897no
aerobicyes84.924no
glucose-fermentyes92.099yes

External links

@ref: 4650

culture collection no.: DSM 12242, NZRM 3262

straininfo link

  • @ref: 74387
  • straininfo: 49254

Reference

@idauthorscataloguedoi/urltitle
4650Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 12242)https://www.dsmz.de/collection/catalogue/details/culture/DSM-12242
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68368Automatically annotated from API 20E
74387Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID49254.1StrainInfo: A central database for resolving microbial strain identifiers