Strain identifier
BacDive ID: 4872
Type strain: 
Species: Escherichia coli
Strain Designation: A278
Strain history: <- M. Achtman, A278
NCBI tax ID(s): 562 (species)
version 9.3 (current version)
General
@ref: 4146
BacDive-ID: 4872
DSM-Number: 10852
keywords: genome sequence, Bacteria, mesophilic, Gram-negative, human pathogen
description: Escherichia coli A278 is a mesophilic, Gram-negative human pathogen that was isolated from Patient with urinary tract infection.
NCBI tax id
- NCBI tax id: 562
- Matching level: species
strain history
- @ref: 4146
- history: <- M. Achtman, A278
doi: 10.13145/bacdive4872.20250331.9.3
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Enterobacterales
- family: Enterobacteriaceae
- genus: Escherichia
- species: Escherichia coli
- full scientific name: Escherichia coli (Migula 1895) Castellani and Chalmers 1919 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Bacillus coli
@ref: 4146
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Enterobacteriales, not validated
family: Enterobacteriaceae
genus: Escherichia
species: Escherichia coli
full scientific name: Escherichia coli (Migula 1895) Castellani and Chalmers 1919
strain designation: A278
type strain: no
Morphology
cell morphology
- @ref: 125438
- gram stain: negative
- confidence: 99.75
Culture and growth conditions
culture medium
- @ref: 4146
- name: LB (Luria-Bertani) MEDIUM (DSMZ Medium 381)
- growth: yes
- link: https://mediadive.dsmz.de/medium/381
- composition: Name: LB (Luria-Bertani) MEDIUM (DSMZ Medium 381) Composition: Agar 20.0 g/l NaCl 10.0 g/l Tryptone 10.0 g/l Yeast extract 5.0 g/l Distilled water
culture temp
- @ref: 4146
- growth: positive
- type: growth
- temperature: 37
Isolation, sampling and environmental information
isolation
- @ref: 4146
- sample type: Patient with urinary tract infection
- country: Sweden
- origin.country: SWE
- continent: Europe
isolation source categories
| Cat1 | Cat2 |
|---|---|
| #Infection | #Disease |
| #Infection | #Patient |
| #Host Body-Site | #Urogenital tract |
Safety information
risk assessment
- @ref: 4146
- pathogenicity human: yes
- pathogenicity animal: yes
- biosafety level: 2
- biosafety level comment: Risk group (German classification)
Sequence information
Genome sequences
- @ref: 66792
- description: Escherichia coli A278
- accession: GCA_003303375
- assembly level: scaffold
- database: ncbi
- NCBI tax ID: 562
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 99.75 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 95.787 | no |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | no | 57.576 | no |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 88.487 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 98.5 | yes |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | yes | 74.356 | no |
External links
@ref: 4146
culture collection no.: DSM 10852
straininfo link
- @ref: 74370
- straininfo: 48987
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 4146 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 10852) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-10852 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 74370 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID48987.1 | StrainInfo: A central database for resolving microbial strain identifiers | |
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | 10.1101/2024.08.12.607695 | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets |