Strain identifier

BacDive ID: 486

Type strain: Yes

Species: Marinobacter maritimus

Strain Designation: CK47

Strain history: CIP <- 2005, JCM <- 2004, MTCC

NCBI tax ID(s): 277961 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 8.1 (current version)

General

@ref: 6511

BacDive-ID: 486

DSM-Number: 16561

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, motile, rod-shaped

description: Marinobacter maritimus CK47 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from sea water south-west of subantarctic Kerguelen islands.

NCBI tax id

  • NCBI tax id: 277961
  • Matching level: species

strain history

@refhistory
6511<- S. Shivaji; CK47
67770S. Shivaji CK47.
120836CIP <- 2005, JCM <- 2004, MTCC

doi: 10.13145/bacdive486.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Alteromonadales
  • family: Alteromonadaceae
  • genus: Marinobacter
  • species: Marinobacter maritimus
  • full scientific name: Marinobacter maritimus Shivaji et al. 2005

@ref: 6511

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Alteromonadales

family: Alteromonadaceae

genus: Marinobacter

species: Marinobacter maritimus

full scientific name: Marinobacter maritimus Shivaji et al. 2005

strain designation: CK47

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotility
31403negative6.6 µm1.85 µmrod-shapedyes
120836negativerod-shapedyes

pigmentation

  • @ref: 31403
  • production: no

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
6511LB (Luria-Bertani) MEDIUM (DSMZ Medium 381)yeshttps://mediadive.dsmz.de/medium/381Name: LB (Luria-Bertani) MEDIUM (DSMZ Medium 381) Composition: Agar 20.0 g/l NaCl 10.0 g/l Tryptone 10.0 g/l Yeast extract 5.0 g/l Distilled water
37276Marine agar (MA)yesDistilled water make up to (1000.000 ml);Marine agar (55.100 g)
120836CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72
120836CIP Medium 13yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=13

culture temp

@refgrowthtypetemperaturerange
6511positivegrowth25mesophilic
31403positivegrowth04-37
31403positiveoptimum22psychrophilic
37276positivegrowth22psychrophilic
67770positivegrowth22psychrophilic
120836positivegrowth5-41

culture pH

@refabilitytypepHPH range
31403positivegrowth6.5-10.5alkaliphile
31403positiveoptimum8.5

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
31403aerobe
120836obligate aerobe

spore formation

  • @ref: 31403
  • spore formation: no

halophily

@refsaltgrowthtested relationconcentration
31403NaClpositivegrowth01-13 %
31403NaClpositiveoptimum4 %
120836NaClpositivegrowth2-10 %
120836NaClnogrowth0 %

observation

@refobservation
31403aggregates in clumps
67770quinones: Q-9

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3140316449alanine+carbon source
3140328757fructose+carbon source
3140329864mannitol+carbon source
3140326271proline+carbon source
3140353424tween 20+carbon source
3140353425tween 60+carbon source
3140353426tween 80+carbon source
3140318222xylose+carbon source
12083616947citrate-carbon source
1208364853esculin-hydrolysis
12083617632nitrate-builds gas from
12083617632nitrate+reduction
12083616301nitrite-builds gas from
12083616301nitrite+reduction

metabolite production

  • @ref: 120836
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
31403acid phosphatase+3.1.3.2
31403catalase+1.11.1.6
31403cytochrome oxidase+1.9.3.1
31403urease+3.5.1.5
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382beta-glucosidase-3.2.1.21
68382alpha-glucosidase-3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase-3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase+
68382acid phosphatase+3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin-3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase-
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)+
68382esterase (C 4)+
68382alkaline phosphatase+3.1.3.1
120836oxidase+
120836beta-galactosidase-3.2.1.23
120836alcohol dehydrogenase-1.1.1.1
120836gelatinase-
120836amylase-
120836DNase-
120836caseinase-3.4.21.50
120836catalase+1.11.1.6
120836tween esterase+
120836gamma-glutamyltransferase+2.3.2.2
120836lecithinase+
120836lipase-
120836lysine decarboxylase-4.1.1.18
120836ornithine decarboxylase-4.1.1.17
120836phenylalanine ammonia-lyase-4.3.1.24
120836protease+
120836tryptophan deaminase-
120836urease-3.5.1.5

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
120836-+++-+----++-----+--

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcontinentcountryorigin.country
6511sea water south-west of subantarctic Kerguelen islandsIndia/AntarcticaAsia
67770Seawater off the subantarcticKerguelen IslandsFrench OverseasFRA
120836Environment, Sea waterSubantarctic Kerguelen IslandsEuropeFranceFRA

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic
  • Cat3: #Marine

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
65111Risk group (German classification)
1208361Risk group (French classification)

Sequence information

16S sequences

  • @ref: 6511
  • description: Marinobacter maritimus partial 16S rRNA gene, type strain CK47T
  • accession: AJ704395
  • length: 1487
  • database: ena
  • NCBI tax ID: 277961

Genome sequences

  • @ref: 66792
  • description: Marinobacter maritimus CK47
  • accession: GCA_007671675
  • assembly level: contig
  • database: ncbi
  • NCBI tax ID: 277961

GC content

@refGC-content
651158.0
3140358

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileyes89.777yes
flagellatedyes88.343no
gram-positiveno98.834yes
anaerobicno98.713no
aerobicyes91.752no
halophileyes89.119no
spore-formingno94.82no
glucose-utilyes64.22no
thermophileno98.308yes
glucose-fermentno89.126no

External links

@ref: 6511

culture collection no.: DSM 16561, JCM 12521, MTCC 6519, CGMCC 1.6490, CIP 108870, LMG 23847

straininfo link

  • @ref: 70165
  • straininfo: 265398

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny16014465Marinobacter maritimus sp. nov., a psychrotolerant strain isolated from sea water off the subantarctic Kerguelen islands.Shivaji S, Gupta P, Chaturvedi P, Suresh K, Delille DInt J Syst Evol Microbiol10.1099/ijs.0.63478-02005Alteromonadaceae/*classification/genetics/*growth & development, Antarctic Regions, Bacterial Typing Techniques, *Cold Temperature, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Genes, rRNA, Genotype, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNAGenetics
Phylogeny26518711Marinobacter aromaticivorans sp. nov., a polycyclic aromatic hydrocarbon-degrading bacterium isolated from sea sediment.Cui Z, Gao W, Xu G, Luan X, Li Q, Yin X, Huang D, Zheng LInt J Syst Evol Microbiol10.1099/ijsem.0.0007222015Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Geologic Sediments/microbiology, Marinobacter/*classification/genetics/isolation & purification, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, Polycyclic Aromatic Hydrocarbons/*metabolism, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistryGenetics

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
6511Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 16561)https://www.dsmz.de/collection/catalogue/details/culture/DSM-16561
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
31403Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2771228776041
37276Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/6547
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68382Automatically annotated from API zym
70165Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID265398.1StrainInfo: A central database for resolving microbial strain identifiers
120836Curators of the CIPCollection of Institut Pasteur (CIP 108870)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20108870