Strain identifier

BacDive ID: 484

Type strain: Yes

Species: Marinobacter lutaoensis

Strain Designation: T 5054, BCRC/CCRC 17087, T5054

Strain history: CIP <- 2004, JCM <- 2001, W.Y. Shieh: strain T5054

NCBI tax ID(s): 135739 (species)

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General

@ref: 7005

BacDive-ID: 484

DSM-Number: 17466

keywords: genome sequence, 16S sequence, Bacteria, thermophilic, motile

description: Marinobacter lutaoensis T 5054 is a thermophilic, motile bacterium that was isolated from water from a coastal hot spring.

NCBI tax id

  • NCBI tax id: 135739
  • Matching level: species

strain history

@refhistory
7005<- W. Y. Shieh; T 5054
67770W. Y. Shieh T5054.
120681CIP <- 2004, JCM <- 2001, W.Y. Shieh: strain T5054

doi: 10.13145/bacdive484.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Alteromonadales
  • family: Alteromonadaceae
  • genus: Marinobacter
  • species: Marinobacter lutaoensis
  • full scientific name: Marinobacter lutaoensis Shieh et al. 2003

@ref: 7005

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Alteromonadales

family: Alteromonadaceae

genus: Marinobacter

species: Marinobacter lutaoensis

full scientific name: Marinobacter lutaoensis Shieh et al. 2003

strain designation: T 5054, BCRC/CCRC 17087, T5054

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram staincell shape
69480yes95.771
6948099.998negative
120681yesnegativerod-shaped

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
7005MARINOBACTER LUTAOENSIS MEDIUM (DSMZ Medium 1066)yeshttps://mediadive.dsmz.de/medium/1066Name: MARINOBACTER LUTAOENSIS MEDIUM (DSMZ Medium 1066) Composition: NaCl 25.0 g/l Bacto peptone 4.0 g/l Yeast extract 2.0 g/l MgCl2 x 6 H2O 2.0 g/l Distilled water
37274MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
120681CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
7005positivegrowth45thermophilic
37274positivegrowth37mesophilic
67770positivegrowth37mesophilic
120681positivegrowth30-41
120681nogrowth5psychrophilic
120681nogrowth15psychrophilic
120681nogrowth22psychrophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481no95
69480no100

halophily

@refsaltgrowthtested relationconcentration
120681NaClpositivegrowth2-6 %
120681NaClnogrowth0 %
120681NaClnogrowth8 %
120681NaClnogrowth10 %

observation

  • @ref: 67770
  • observation: quinones: Q-8

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
1206814853esculin-hydrolysis
12068117632nitrate-builds gas from
12068117632nitrate-reduction
12068116301nitrite-builds gas from
12068116301nitrite-reduction

antibiotic resistance

  • @ref: 120681
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

  • @ref: 120681
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382beta-glucosidase-3.2.1.21
68382alpha-glucosidase-3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase-3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase+
68382acid phosphatase+3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin-3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase-
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)+
68382esterase (C 4)+
68382alkaline phosphatase+3.1.3.1
120681oxidase+
120681beta-galactosidase-3.2.1.23
120681alcohol dehydrogenase-1.1.1.1
120681gelatinase-
120681amylase-
120681DNase-
120681caseinase-3.4.21.50
120681catalase+1.11.1.6
120681tween esterase-
120681gamma-glutamyltransferase+2.3.2.2
120681lecithinase-
120681lipase-
120681lysine decarboxylase-4.1.1.18
120681ornithine decarboxylase-4.1.1.17
120681phenylalanine ammonia-lyase-4.3.1.24
120681protease+
120681tryptophan deaminase-
120681urease-3.5.1.5

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
120681-+++-+----++-----+--

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
7005water from a coastal hot springLutaoTaiwanTWNAsia
67770Water sample collected at a coastal hot springLutaoTaiwanTWNAsia
120681Environment, Hot springLutao coastTaiwanTWNAsia

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Thermal spring
#Environmental#Terrestrial#Coast
#Condition#Thermophilic (>45°C)

taxonmaps

  • @ref: 69479
  • File name: preview.99_4409.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_89;96_2207;97_2672;98_3313;99_4409&stattab=map
  • Last taxonomy: Marinobacter lutaoensis subclade
  • 16S sequence: AF288157
  • Sequence Identity:
  • Total samples: 1665
  • soil counts: 111
  • aquatic counts: 1455
  • animal counts: 82
  • plant counts: 17

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
70051Risk group (German classification)
1206811Risk group (French classification)

Sequence information

16S sequences

  • @ref: 7005
  • description: Marinobacter lutaoensis 16S ribosomal RNA gene, partial sequence
  • accession: AF288157
  • length: 1529
  • database: ena
  • NCBI tax ID: 135739

Genome sequences

  • @ref: 66792
  • description: Marinobacter lutaoensis strain T5054
  • accession: 135739.3
  • assembly level: wgs
  • database: patric
  • NCBI tax ID: 135739

GC content

  • @ref: 67770
  • GC-content: 63.5

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno95no
motileyes90.686no
gram-positiveno98.83no
anaerobicno97.265no
halophileyes87.886no
spore-formingno95.965no
thermophileno98.699no
glucose-utilyes56.534no
flagellatedyes89.521no
aerobicyes82.542no
glucose-fermentno85.156no

External links

@ref: 7005

culture collection no.: DSM 17466, BCRC 17087, CCRC 17087, JCM 11179, CIP 108251

straininfo link

  • @ref: 70163
  • straininfo: 88443

literature

  • topic: Phylogeny
  • Pubmed-ID: 12897833
  • title: Marinobacter lutaoensis sp. nov., a thermotolerant marine bacterium isolated from a coastal hot spring in Lutao, Taiwan.
  • authors: Shieh WY, Jean WD, Lin YT, Tseng M
  • journal: Can J Microbiol
  • DOI: 10.1139/w03-032
  • year: 2003
  • mesh: Alteromonadaceae/*classification/cytology/*isolation & purification/physiology, Anti-Bacterial Agents/pharmacology, Base Composition, Culture Media, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/genetics, Diaminopimelic Acid/analysis, Fatty Acids/analysis, Hot Temperature, Hydrogen-Ion Concentration, Microbial Sensitivity Tests, Molecular Sequence Data, Peptidoglycan/analysis/chemistry, Phylogeny, RNA, Ribosomal, 16S/genetics, Taiwan, *Water Microbiology
  • topic2: Cultivation

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
7005Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 17466)https://www.dsmz.de/collection/catalogue/details/culture/DSM-17466
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
37274Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/5853
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
70163Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID88443.1StrainInfo: A central database for resolving microbial strain identifiers
120681Curators of the CIPCollection of Institut Pasteur (CIP 108251)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20108251