Strain identifier

BacDive ID: 482

Type strain: Yes

Species: Marinobacter algicola

Strain Designation: DG893

Culture col. no.: DSM 16394, CIP 109780, NCIMB 14009

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General

@ref: 6426

BacDive-ID: 482

DSM-Number: 16394

keywords: gram-negative, mesophilic, aerobe, Bacteria, 16S sequence, motile, rod-shaped

description: Marinobacter algicola DG893 is an aerobe, mesophilic, gram-negative bacterium that was isolated from lab culture of dinoflagellate Gymnodinium catenatum YC499B15.

strain history: <- D. H. Green; DG893

doi: 10.13145/bacdive482.20201210.5

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/proteobacteria
  • domain: Bacteria
  • phylum: Proteobacteria
  • class: Gammaproteobacteria
  • order: Alteromonadales
  • family: Alteromonadaceae
  • genus: Marinobacter
  • species: Marinobacter algicola
  • full scientific name: Marinobacter algicola Green et al. 2006

@ref: 6426

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Alteromonadales

family: Alteromonadaceae

genus: Marinobacter

species: Marinobacter algicola

full scientific name: Marinobacter algicola Green et al. 2006

strain designation: DG893

type strain: yes

Morphology

cell morphology

  • @ref: 31386
  • gram stain: negative
  • cell length: 1.6-2.5 µm
  • cell width: 0.45-0.55 µm
  • cell shape: rod-shaped
  • motility: yes

pigmentation

  • @ref: 31386
  • production: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
6426BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium514.pdf
37838Marine agar (MA)yesDistilled water make up to (1000.000 ml);Marine agar (55.100 g)

culture temp

@refgrowthtypetemperaturerange
6426positivegrowth28mesophilic
31386positivegrowth05-40
31386positiveoptimum25-30mesophilic
37838positivegrowth30mesophilic

culture pH

@refabilitytypepH
31386positivegrowth05-10
31386positiveoptimum7.5

Physiology and metabolism

oxygen tolerance

  • @ref: 31386
  • oxygen tolerance: aerobe

spore formation

  • @ref: 31386
  • spore formation: no

halophily

@refsaltgrowthtested relationconcentration
31386NaClpositivegrowth01-12 %
31386NaClpositiveoptimum03-06 %

observation

  • @ref: 31386
  • observation: aggregates in chains

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3138616449alanine+carbon source
3138616947citrate+carbon source
3138628757fructose+carbon source
3138624265gluconate+carbon source
3138617234glucose+carbon source
3138617754glycerol+carbon source
3138624996lactate+carbon source
3138625017leucine+carbon source
3138617306maltose+carbon source
3138629864mannitol+carbon source
3138628044phenylalanine+carbon source
3138626271proline+carbon source

enzymes

@refvalueactivityec
31386catalase+1.11.1.6
31386cytochrome oxidase+1.9.3.1
31386urease+3.5.1.5

Isolation, sampling and environmental information

isolation

  • @ref: 6426
  • sample type: lab culture of dinoflagellate Gymnodinium catenatum YC499B15
  • host species: Gymnodinium catenatum
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Engineered#Laboratory#Lab enrichment
#Host#Protozoa#Dinoflagellate

Safety information

risk assessment

  • @ref: 6426
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 6426
  • description: Marinobacter algicola DG893 small subunit ribosomal RNA gene, partial sequence
  • accession: AY258110
  • length: 1485
  • database: ena
  • NCBI tax ID: 443152

GC content

  • @ref: 31386
  • GC-content: 54-55

External links

@ref: 6426

culture collection no.: DSM 16394, CIP 109780, NCIMB 14009

straininfo link

@refpassport
20218http://www.straininfo.net/strains/677518
20218http://www.straininfo.net/strains/900093
20218http://www.straininfo.net/strains/565348

Reference

@idauthorscataloguedoi/urltitlejournalpubmedID_cross_reference
6426Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 16394)https://www.dsmz.de/collection/catalogue/details/culture/DSM-16394
20215D.Gleim, M.Kracht, N.Weiss et. al.http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.htmlProkaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
2769710.1099/ijs.0.63447-0
31386Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information27697
37838Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/7561