Strain identifier

BacDive ID: 481

Type strain: Yes

Species: Marinobacter flavimaris

Strain Designation: SW145

Culture col. no.: DSM 16070

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General

@ref: 6256

BacDive-ID: 481

DSM-Number: 16070

keywords: rod-shaped, motile, gram-negative, mesophilic, anaerobe, Bacteria, 16S sequence, genome sequence, colony-forming

description: Marinobacter flavimaris SW145 is an anaerobe, mesophilic, gram-negative bacterium that forms circular colonies and was isolated from sea water of tidal flat.

strain history: <- J.-H. Yoon; SW145

doi: 10.13145/bacdive481.20201210.5

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/proteobacteria
  • domain: Bacteria
  • phylum: Proteobacteria
  • class: Gammaproteobacteria
  • order: Alteromonadales
  • family: Alteromonadaceae
  • genus: Marinobacter
  • species: Marinobacter flavimaris
  • full scientific name: Marinobacter flavimaris Yoon et al. 2004

@ref: 6256

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Alteromonadales

family: Alteromonadaceae

genus: Marinobacter

species: Marinobacter flavimaris

full scientific name: Marinobacter flavimaris Yoon et al. 2004

strain designation: SW145

type strain: yes

Morphology

cell morphology

  • @ref: 23298
  • gram stain: negative
  • cell length: 1.5-3.0 µm
  • cell width: 0.6-0.9 µm
  • cell shape: rod-shaped
  • motility: yes
  • flagellum arrangement: monotrichous, polar

colony morphology

  • @ref: 23298
  • colony size: 1-2 mm
  • colony color: cream
  • colony shape: circular
  • incubation period: 3 days
  • medium used: MA

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
6256BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium514.pdf
23298Marine agar (MA)yes
37266Marine agar (MA)yesDistilled water make up to (1000.000 ml);Marine agar (55.100 g)

culture temp

@refgrowthtypetemperaturerange
6256positivegrowth30mesophilic
23298positivegrowth4psychrophilic
23298positivemaximum45thermophilic
23298positiveoptimum37mesophilic
37266positivegrowth30mesophilic

culture pH

@refabilitytypepH
23298positiveoptimum7.0-8.0
23298positivegrowth5.5
23298nogrowth5.0

Physiology and metabolism

oxygen tolerance

  • @ref: 23298
  • oxygen tolerance: anaerobe

spore formation

  • @ref: 23298
  • spore formation: no

halophily

@refsaltgrowthtested relationconcentrationhalophily level
23298NaClpositiveoptimum2-6 %
23298NaClpositivegrowth20 %
23298NaClnogrowth>21 %
23298slightly halophilic
23298NaClnogrowth0 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2329835391aspartate-assimilation
2329817634D-glucose-assimilation
2329816899D-mannitol-assimilation
2329816449dl-alanine-assimilation
2329816467L-arginine-assimilation
2329829985L-glutamate-assimilation
2329815963ribitol-builds acid from
2329817057cellobiose-builds acid from
2329812936D-galactose-builds acid from
2329817634D-glucose-builds acid from
2329816899D-mannitol-builds acid from
2329816024D-mannose-builds acid from
232986731melezitose-builds acid from
2329816634raffinose-builds acid from
2329816988D-ribose-builds acid from
2329817924D-sorbitol-builds acid from
2329816551D-trehalose-builds acid from
2329865327D-xylose-builds acid from
2329830849L-arabinose-builds acid from
2329862345L-rhamnose-builds acid from
2329817716lactose-builds acid from
2329817306maltose-builds acid from
2329828053melibiose-builds acid from
2329817268myo-inositol-builds acid from
2329817992sucrose-builds acid from
2329817754glycerol-carbon source
2329845296hexadecane-carbon source
2329817115L-serine-carbon source
2329817754glycerol-energy source
2329845296hexadecane-energy source
2329817115L-serine-energy source
23298casein-hydrolysis
232984853esculin-hydrolysis
232985291gelatin-hydrolysis
2329817368hypoxanthine-hydrolysis
2329828017starch-hydrolysis
2329818186tyrosine-hydrolysis
2329815318xanthine-hydrolysis
2329816301nitrite-reduction
2329815824D-fructose+assimilation
232988391D-gluconate+assimilation
2329830031succinate+assimilation
2329815824D-fructose+builds acid from
2329853424tween 20+hydrolysis
2329853423tween 40+hydrolysis
2329853425tween 60+hydrolysis
2329853426tween 80+hydrolysis
2329817632nitrate+reduction

enzymes

@refvalueactivityec
23298lipase (C 14)-
23298urease-3.5.1.5
23298valine arylamidase-

Isolation, sampling and environmental information

isolation

  • @ref: 6256
  • sample type: sea water of tidal flat
  • geographic location: Daepo Beach of Yellow Sea
  • country: Republic of Korea
  • origin.country: KOR
  • continent: Asia

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Marine
#Environmental#Aquatic#Tidal flat

Safety information

risk assessment

  • @ref: 6256
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 23298
  • description: Marinobacter flavimaris strain SW-145 16S ribosomal RNA gene, partial sequence
  • accession: AY517632
  • length: 1495
  • database: nuccore
  • NCBI tax ID: 262076

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Marinobacter flavimaris KCTC 12185GCA_003363485contigncbi262076
66792Marinobacter flavimaris LMG 23834GCA_002933295scaffoldncbi262076
66792Marinobacter flavimaris strain KCTC 12185262076.4wgspatric262076
66792Marinobacter flavimaris strain LMG 23834262076.3wgspatric262076

GC content

  • @ref: 23298
  • GC-content: 58.00
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 6256

culture collection no.: DSM 16070

straininfo link

  • @ref: 20218
  • passport: http://www.straininfo.net/strains/381444

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
6256Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 16070)https://www.dsmz.de/collection/catalogue/details/culture/DSM-16070
20215D.Gleim, M.Kracht, N.Weiss et. al.http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.htmlProkaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
23298Jung-Hoon Yoon, Soo-Hwan Yeo, In-Gi Kim, Tae-Kwang Oh10.1099/ijs.0.63151-0Marinobacter flavimaris sp. nov. and Marinobacter daepoensis sp. nov., slightly halophilic organisms isolated from sea water of the Yellow Sea in KoreaIJSEM 54: 1799-1803 2004
37266Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/6264
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)