Strain identifier

BacDive ID: 480

Type strain: Yes

Species: Marinobacter bryozoorum

Strain Designation: 114-50-11

Strain history: <- L. A. Romanenko; 114-50-11

NCBI tax ID(s): 256324 (species)

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General

@ref: 5896

BacDive-ID: 480

DSM-Number: 15401

keywords: genome sequence, 16S sequence, Bacteria, aerobe, heterotroph, mesophilic, Gram-negative, motile, rod-shaped

description: Marinobacter bryozoorum 114-50-11 is an aerobe, heterotroph, mesophilic bacterium that was isolated from sponge.

NCBI tax id

  • NCBI tax id: 256324
  • Matching level: species

strain history

  • @ref: 5896
  • history: <- L. A. Romanenko; 114-50-11

doi: 10.13145/bacdive480.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Alteromonadales
  • family: Alteromonadaceae
  • genus: Marinobacter
  • species: Marinobacter bryozoorum
  • full scientific name: Marinobacter bryozoorum Romanenko et al. 2005

@ref: 5896

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Alteromonadales

family: Alteromonadaceae

genus: Marinobacter

species: Marinobacter bryozoorum

full scientific name: Marinobacter bryozoorum Romanenko et al. 2005

strain designation: 114-50-11

type strain: yes

Morphology

cell morphology

  • @ref: 23297
  • gram stain: negative
  • cell length: 1.0-1.3 µm
  • cell width: 0.4-0.5 µm
  • cell shape: rod-shaped
  • motility: yes

colony morphology

  • @ref: 23297
  • colony size: 2-3 mm
  • colony color: whitish, translucent
  • medium used: MA

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
5896BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)yeshttps://mediadive.dsmz.de/medium/514Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
23297Marine agar (MA)yes

culture temp

@refgrowthtypetemperaturerange
5896positivegrowth28mesophilic
23297positivegrowth7-42
23297nogrowth43thermophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 23297
  • oxygen tolerance: aerobe

nutrition type

  • @ref: 23297
  • type: heterotroph

halophily

@refsaltgrowthtested relationconcentration
23297NaClpositivegrowth1-18 %
23297NaClnogrowth18.5 %
23297NaClnogrowth0 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2329730089acetate-assimilation
2329715963ribitol-assimilation
2329736219alpha-lactose-assimilation
2329717968butyrate-assimilation
2329727689decanoate-assimilation
2329717057cellobiose-assimilation
2329716947citrate-assimilation
2329718333D-arabitol-assimilation
2329715824D-fructose-assimilation
2329712936D-galactose-assimilation
232978391D-gluconate-assimilation
2329717634D-glucose-assimilation
2329716899D-mannitol-assimilation
2329716024D-mannose-assimilation
2329728053melibiose-assimilation
2329716634raffinose-assimilation
2329717924D-sorbitol-assimilation
2329716551D-trehalose-assimilation
2329717113erythritol-assimilation
2329728066gentiobiose-assimilation
2329730849L-arabinose-assimilation
2329718287L-fucose-assimilation
2329729985L-glutamate-assimilation
2329715603L-leucine-assimilation
2329715589L-malate-assimilation
2329717203L-proline-assimilation
2329762345L-rhamnose-assimilation
2329724996lactate-assimilation
232976359lactulose-assimilation
2329725115malate-assimilation
2329717306maltose-assimilation
23297320055methyl beta-D-glucopyranoside-assimilation
2329717268myo-inositol-assimilation
2329728037N-acetylgalactosamine-assimilation
23297506227N-acetylglucosamine-assimilation
2329718401phenylacetate-assimilation
2329733951psicose-assimilation
2329717992sucrose-assimilation
2329732528turanose-assimilation
2329717151xylitol-assimilation
2329722599arabinose-builds acid from
2329728260galactose-builds acid from
2329717234glucose-builds acid from
2329717754glycerol-builds acid from
2329717716lactose-builds acid from
2329717306maltose-builds acid from
2329729864mannitol-builds acid from
23297506227N-acetylglucosamine-builds acid from
2329726546rhamnose-builds acid from
2329717992sucrose-builds acid from
232974853esculin-hydrolysis
232975291gelatin-hydrolysis
2329753426tween 80-hydrolysis
2329716199urea-hydrolysis
2329717632nitrate-reduction
2329717128adipate+assimilation
2329717057cellobiose+assimilation
2329716024D-mannose+assimilation
2329716977L-alanine+assimilation
2329717115L-serine+assimilation
2329751850methyl pyruvate+assimilation
2329717992sucrose+assimilation
2329753423tween 40+assimilation

metabolite production

  • @ref: 23297
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
23297acid phosphatase+/-3.1.3.2
23297amylase-
23297arginine dihydrolase-3.5.3.6
23297caseinase-3.4.21.50
23297catalase+1.11.1.6
23297chitinase-3.2.1.14
23297cytochrome oxidase+1.9.3.1
23297esterase (C 4)-
23297esterase lipase (C 8)+/-
23297leucine arylamidase+3.4.11.1
23297urease-3.5.1.5
23297valine arylamidase+/-

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
5896spongeBering SeaRussiaRUSEurope
23297Bryozoa specimen

isolation source categories

  • Cat1: #Host
  • Cat2: #Invertebrates (Other)
  • Cat3: #Porifera (Sponges)

taxonmaps

  • @ref: 69479
  • File name: preview.99_56259.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_89;96_1317;97_5482;98_14085;99_56259&stattab=map
  • Last taxonomy: Marinobacter bryozoorum
  • 16S sequence: AJ609271
  • Sequence Identity:
  • Total samples: 32
  • soil counts: 1
  • aquatic counts: 30
  • plant counts: 1

Safety information

risk assessment

  • @ref: 5896
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 5896
  • description: Marinobacter bryozoanae 16S rRNA gene, type strain 50-11T
  • accession: AJ609271
  • length: 1507
  • database: ena
  • NCBI tax ID: 256324

Genome sequences

  • @ref: 66792
  • description: Marinobacter bryozoorum DSM 15401
  • accession: GCA_023156245
  • assembly level: scaffold
  • database: ncbi
  • NCBI tax ID: 256324

GC content

  • @ref: 23297
  • GC-content: 59.6
  • method: thermal denaturation, midpoint method (Tm)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
flagellatedyes85.193no
gram-positiveno98.192yes
anaerobicno96.823yes
aerobicyes86.628yes
halophileyes79.008no
spore-formingno95.569no
motileyes90.418yes
glucose-fermentno88.433no
thermophileno98.917no
glucose-utilno59.627yes

External links

@ref: 5896

culture collection no.: DSM 15401, KMM 3840

straininfo link

  • @ref: 70159
  • straininfo: 127681

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny15653867Marinobacter bryozoorum sp. nov. and Marinobacter sediminum sp. nov., novel bacteria from the marine environment.Romanenko LA, Schumann P, Rohde M, Zhukova NV, Mikhailov VV, Stackebrandt EInt J Syst Evol Microbiol10.1099/ijs.0.63258-02005Alteromonadaceae/*classification/genetics/isolation & purification/physiology, Bacterial Typing Techniques, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Fatty Acids/analysis, Genes, rRNA, Molecular Sequence Data, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNAGenetics
Phylogeny19542119Marinobacter lacisalsi sp. nov., a moderately halophilic bacterium isolated from the saline-wetland wildfowl reserve Fuente de Piedra in southern Spain.Aguilera M, Jimenez-Pranteda ML, Kharroub K, Gonzalez-Paredes A, Durban JJ, Russell NJ, Ramos-Cormenzana A, Monteoliva-Sanchez MInt J Syst Evol Microbiol10.1099/ijs.0.007518-02009Bacterial Typing Techniques, Base Composition, *Conservation of Natural Resources, DNA, Bacterial/analysis, Fatty Acids/analysis, Fresh Water/*microbiology, Genes, rRNA, Genotype, Marinobacter/*classification/genetics/isolation & purification/physiology, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Sodium Chloride, Spain, Species Specificity, *WetlandsGenetics
Phylogeny23117603Marinobacter nanhaiticus sp. nov., polycyclic aromatic hydrocarbon-degrading bacterium isolated from the sediment of the South China Sea.Gao W, Cui Z, Li Q, Xu G, Jia X, Zheng LAntonie Van Leeuwenhoek10.1007/s10482-012-9830-z2012Bacterial Typing Techniques, Base Composition, Benzoquinones/analysis, China, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Environmental Pollutants/metabolism, Fatty Acids/analysis, Geologic Sediments/*microbiology, Hydrogen-Ion Concentration, Marinobacter/*classification/genetics/*isolation & purification/physiology, Molecular Sequence Data, Phylogeny, Polycyclic Aromatic Hydrocarbons/*metabolism, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, TemperatureMetabolism

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
5896Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 15401)https://www.dsmz.de/collection/catalogue/details/culture/DSM-15401
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
23297Lyudmila A. Romanenko, Peter Schumann, Manfred Rohde, Natalia V. Zhukova, Valery V. Mikhailov, Erko Stackebrandt10.1099/ijs.0.63258-0Marinobacter bryozoorum sp. nov. and Marinobacter sediminum sp. nov., novel bacteria from the marine environmentIJSEM 55: 143-148 200515653867
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
70159Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID127681.1StrainInfo: A central database for resolving microbial strain identifiers