Strain identifier

BacDive ID: 4736

Type strain: No

Species: Escherichia coli

Strain history: <- NCIMB <- NCTC <- E. Taylor

NCBI tax ID(s): 562 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 8.1 (current version)

General

@ref: 3856

BacDive-ID: 4736

DSM-Number: 10233

keywords: genome sequence, Bacteria, motile

description: Escherichia coli DSM 10233 is a motile bacterium of the family Enterobacteriaceae.

NCBI tax id

  • NCBI tax id: 562
  • Matching level: species

strain history

  • @ref: 3856
  • history: <- NCIMB <- NCTC <- E. Taylor

doi: 10.13145/bacdive4736.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Enterobacteriaceae
  • genus: Escherichia
  • species: Escherichia coli
  • full scientific name: Escherichia coli (Migula 1895) Castellani and Chalmers 1919 (Approved Lists 1980)
  • synonyms

    • @ref: 20215
    • synonym: Bacillus coli

@ref: 3856

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacteriales, not validated

family: Enterobacteriaceae

genus: Escherichia

species: Escherichia coli

full scientific name: Escherichia coli (Migula 1895) Castellani and Chalmers 1919

type strain: no

Morphology

cell morphology

@refmotilityconfidencegram stain
69480yes95.719
6948099.97negative

Physiology and metabolism

spore formation

@refspore formationconfidence
69481no100
69480no99.823

Safety information

risk assessment

  • @ref: 3856
  • biosafety level: 3**
  • biosafety level comment: Risk group (German classification)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Escherichia marmotae NCTC8196GCA_900636405completencbi1499973
66792Escherichia coli strain NCTC8196562.39541completepatric562

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
flagellatedno54.708no
gram-positiveno98.492no
anaerobicno94.245no
aerobicyes78.831no
halophileno92.062no
spore-formingno94.241no
thermophileno98.809no
glucose-utilyes94.275no
motileyes89.016no
glucose-fermentyes93.113no

External links

@ref: 3856

culture collection no.: DSM 10233, NCDO 745, NCIMB 8277, NCTC 8196

straininfo link

  • @ref: 74234
  • straininfo: 48783

Reference

@idauthorscataloguedoi/urltitle
3856Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 10233)https://www.dsmz.de/collection/catalogue/details/culture/DSM-10233
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
74234Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID48783.1StrainInfo: A central database for resolving microbial strain identifiers