Strain identifier
BacDive ID: 4736
Type strain:
Species: Escherichia coli
Strain history: <- NCIMB <- NCTC <- E. Taylor
NCBI tax ID(s): 562 (species)
version 8.1 (current version)
General
@ref: 3856
BacDive-ID: 4736
DSM-Number: 10233
keywords: genome sequence, Bacteria, motile
description: Escherichia coli DSM 10233 is a motile bacterium of the family Enterobacteriaceae.
NCBI tax id
- NCBI tax id: 562
- Matching level: species
strain history
- @ref: 3856
- history: <- NCIMB <- NCTC <- E. Taylor
doi: 10.13145/bacdive4736.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Enterobacterales
- family: Enterobacteriaceae
- genus: Escherichia
- species: Escherichia coli
- full scientific name: Escherichia coli (Migula 1895) Castellani and Chalmers 1919 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Bacillus coli
@ref: 3856
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Enterobacteriales, not validated
family: Enterobacteriaceae
genus: Escherichia
species: Escherichia coli
full scientific name: Escherichia coli (Migula 1895) Castellani and Chalmers 1919
type strain: no
Morphology
cell morphology
@ref | motility | confidence | gram stain |
---|---|---|---|
69480 | yes | 95.719 | |
69480 | 99.97 | negative |
Physiology and metabolism
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | no | 100 |
69480 | no | 99.823 |
Safety information
risk assessment
- @ref: 3856
- biosafety level: 3**
- biosafety level comment: Risk group (German classification)
Sequence information
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Escherichia marmotae NCTC8196 | GCA_900636405 | complete | ncbi | 1499973 |
66792 | Escherichia coli strain NCTC8196 | 562.39541 | complete | patric | 562 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 100 | no |
flagellated | no | 54.708 | no |
gram-positive | no | 98.492 | no |
anaerobic | no | 94.245 | no |
aerobic | yes | 78.831 | no |
halophile | no | 92.062 | no |
spore-forming | no | 94.241 | no |
thermophile | no | 98.809 | no |
glucose-util | yes | 94.275 | no |
motile | yes | 89.016 | no |
glucose-ferment | yes | 93.113 | no |
External links
@ref: 3856
culture collection no.: DSM 10233, NCDO 745, NCIMB 8277, NCTC 8196
straininfo link
- @ref: 74234
- straininfo: 48783
Reference
@id | authors | catalogue | doi/url | title |
---|---|---|---|---|
3856 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 10233) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-10233 | |
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |
74234 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID48783.1 | StrainInfo: A central database for resolving microbial strain identifiers |