Strain identifier
BacDive ID: 472
Type strain: 
Species: Bowmanella denitrificans
Strain Designation: BD1
Strain history: W. Y. Shieh BD1.
NCBI tax ID(s): 366582 (species)
version 8.1 (current version)
General
@ref: 8256
BacDive-ID: 472
DSM-Number: 19705
keywords: 16S sequence, Bacteria, mesophilic
description: Bowmanella denitrificans BD1 is a mesophilic bacterium that was isolated from shallow coastal water.
NCBI tax id
- NCBI tax id: 366582
- Matching level: species
strain history
| @ref | history |
|---|---|
| 8256 | <- BCRC <- W. Y. Shieh, Natl. Taiwan Univ., Inst. Oceanography, Taipei; BD1 |
| 67770 | W. Y. Shieh BD1. |
doi: 10.13145/bacdive472.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Alteromonadales
- family: Alteromonadaceae
- genus: Bowmanella
- species: Bowmanella denitrificans
- full scientific name: Bowmanella denitrificans Jean et al. 2006
@ref: 8256
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Alteromonadales
family: Alteromonadaceae
genus: Bowmanella
species: Bowmanella denitrificans
full scientific name: Bowmanella denitrificans Jean et al. 2006
strain designation: BD1
type strain: yes
Culture and growth conditions
culture medium
- @ref: 8256
- name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
- growth: yes
- link: https://mediadive.dsmz.de/medium/514
- composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 8256 | positive | growth | 28 | mesophilic |
| 67770 | positive | growth | 30 | mesophilic |
Physiology and metabolism
observation
- @ref: 67770
- observation: quinones: Q-8 (81.5%), Q-9 (11.1%)
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 8256 | shallow coastal water | Tainan, An-Ping Harbour | Taiwan | TWN | Asia |
| 67770 | Shallow coastal water from An-Ping Harbour | Tainan | Taiwan | TWN | Asia |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Marine |
| #Environmental | #Terrestrial | #Coast |
taxonmaps
- @ref: 69479
- File name: preview.99_76750.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_98;96_28226;97_35547;98_45911;99_76750&stattab=map
- Last taxonomy: Bowmanella denitrificans
- 16S sequence: DQ343294
- Sequence Identity:
- Total samples: 502
- soil counts: 34
- aquatic counts: 328
- animal counts: 134
- plant counts: 6
Safety information
risk assessment
- @ref: 8256
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 8256
- description: Bowmanella denitrificans strain BD1 16S ribosomal RNA gene, partial sequence
- accession: DQ343294
- length: 1459
- database: ena
- NCBI tax ID: 366582
External links
@ref: 8256
culture collection no.: DSM 19705, BCRC 17491, JCM 13378
straininfo link
- @ref: 70151
- straininfo: 297143
literature
- topic: Phylogeny
- Pubmed-ID: 17012580
- title: Bowmanella denitrificans gen. nov., sp. nov., a denitrifying bacterium isolated from seawater from An-Ping Harbour, Taiwan.
- authors: Jean WD, Chen JS, Lin YT, Shieh WY
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.64306-0
- year: 2006
- mesh: Bacterial Typing Techniques, Base Composition, DNA, Bacterial/analysis, Gammaproteobacteria/*classification/genetics/*isolation & purification/physiology, Genes, rRNA, Molecular Sequence Data, Nitrates/metabolism, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Taiwan
- topic2: Genetics
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 8256 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19705) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-19705 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
| 70151 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID297143.1 | StrainInfo: A central database for resolving microbial strain identifiers |