Strain identifier
BacDive ID: 458
Type strain: 
Species: Marinobacterium jannaschii
Strain Designation: 207
Strain history: <- NCIMB <- ATCC <- P. Baumann
NCBI tax ID(s): 1122200 (strain), 64970 (species)
version 8.1 (current version)
General
@ref: 2579
BacDive-ID: 458
DSM-Number: 6295
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, motile
description: Marinobacterium jannaschii 207 is a mesophilic, motile bacterium that was isolated from seawater.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 64970 | species |
| 1122200 | strain |
strain history
- @ref: 2579
- history: <- NCIMB <- ATCC <- P. Baumann
doi: 10.13145/bacdive458.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Alteromonadales
- family: Alteromonadaceae
- genus: Marinobacterium
- species: Marinobacterium jannaschii
- full scientific name: Marinobacterium jannaschii (Bowditch et al. 1984) Satomi et al. 2002
synonyms
- @ref: 20215
- synonym: Oceanospirillum jannaschii
@ref: 2579
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Alteromonadales
family: Alteromonadaceae
genus: Marinobacterium
species: Marinobacterium jannaschii
full scientific name: Marinobacterium jannaschii (Bowditch et al. 1984) Satomi et al. 2002
strain designation: 207
type strain: yes
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | yes | 93.444 | |
| 69480 | 99.994 | negative |
Culture and growth conditions
culture medium
- @ref: 2579
- name: SEAWATER YEAST PEPTONE AGAR (DSMZ Medium 243)
- growth: yes
- link: https://mediadive.dsmz.de/medium/243
- composition: Name: SEAWATER YEAST PEPTONE AGAR (DSMZ Medium 243) Composition: Agar 12.0 g/l Peptone 5.0 g/l Yeast extract 3.0 g/l Sea water Distilled water
culture temp
- @ref: 2579
- growth: positive
- type: growth
- temperature: 25
- range: mesophilic
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 100 |
| 69480 | no | 99.264 |
Isolation, sampling and environmental information
isolation
- @ref: 2579
- sample type: seawater
- geographic location: Hawaii
- country: USA
- origin.country: USA
- continent: North America
isolation source categories
- Cat1: #Environmental
- Cat2: #Aquatic
- Cat3: #Marine
taxonmaps
- @ref: 69479
- File name: preview.99_84993.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_240;96_35445;97_45001;98_58888;99_84993&stattab=map
- Last taxonomy: Marinobacterium jannaschii subclade
- 16S sequence: AB006765
- Sequence Identity:
- Total samples: 250
- soil counts: 2
- aquatic counts: 241
- animal counts: 7
Safety information
risk assessment
- @ref: 2579
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Marinobacterium jannaschii gene for 16S rRNA, partial sequence, strain: NBRC 15466 | AB680864 | 1467 | ena | 64970 |
| 2579 | Marinobacterium jannaschii gene for 16S rRNA, partial sequence, strain: IFO 15466 | AB006765 | 1463 | ena | 64970 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Marinobacterium jannaschii DSM 6295 | GCA_000620085 | scaffold | ncbi | 1122200 |
| 66792 | Marinobacterium jannaschii DSM 6295 | 1122200.3 | wgs | patric | 1122200 |
| 66792 | Marinobacterium jannaschii DSM 6295 | 2556921010 | draft | img | 1122200 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| motile | yes | 92.816 | no |
| flagellated | yes | 94.272 | no |
| gram-positive | no | 99.034 | no |
| anaerobic | no | 97.217 | no |
| halophile | yes | 73.883 | no |
| spore-forming | no | 92.202 | no |
| thermophile | no | 99.372 | yes |
| glucose-util | yes | 73.008 | no |
| aerobic | yes | 67.84 | no |
| glucose-ferment | no | 80.258 | no |
External links
@ref: 2579
culture collection no.: DSM 6295, ATCC 27135, NCIMB 2044
straininfo link
- @ref: 70137
- straininfo: 3652
literature
- topic: Phylogeny
- Pubmed-ID: 35460040
- title: Marinobacterium arenosum sp. nov., isolated from a coastal sand.
- authors: Lee Y, Weerawongwiwat V, Kim JH, Yoon JH, Lee JS, Sukhoom A, Kim W
- journal: Arch Microbiol
- DOI: 10.1007/s00203-022-02900-2
- year: 2022
- mesh: *Alteromonadaceae, Bacterial Typing Techniques, DNA, Bacterial/genetics, Fatty Acids/analysis, Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, *Sand, Sequence Analysis, DNA, Ubiquinone/chemistry
- topic2: Transcriptome
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 2579 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 6295) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-6295 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
| 70137 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID3652.1 | StrainInfo: A central database for resolving microbial strain identifiers |