Strain identifier

BacDive ID: 4579

Type strain: No

Species: Escherichia coli

Strain Designation: K12 K802, K802

Strain history: <- ATCC <- G.P. Smith <- F. Blattner

NCBI tax ID(s): 562 (species)

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General

@ref: 2359

BacDive-ID: 4579

DSM-Number: 5912

keywords: genome sequence, Bacteria, aerobe, mesophilic

description: Escherichia coli K12 K802 is an aerobe, mesophilic bacterium of the family Enterobacteriaceae.

NCBI tax id

  • NCBI tax id: 562
  • Matching level: species

strain history

  • @ref: 2359
  • history: <- ATCC <- G.P. Smith <- F. Blattner

doi: 10.13145/bacdive4579.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Enterobacteriaceae
  • genus: Escherichia
  • species: Escherichia coli
  • full scientific name: Escherichia coli (Migula 1895) Castellani and Chalmers 1919 (Approved Lists 1980)

  • synonyms

    • @ref: 20215
    • synonym: Bacillus coli

@ref: 2359

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacteriales, not validated

family: Enterobacteriaceae

genus: Escherichia

species: Escherichia coli

full scientific name: Escherichia coli (Migula 1895) Castellani and Chalmers 1919

strain designation: K12 K802, K802

type strain: no

Culture and growth conditions

culture medium

  • @ref: 2359
  • name: LB (Luria-Bertani) MEDIUM (DSMZ Medium 381)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/381
  • composition: Name: LB (Luria-Bertani) MEDIUM (DSMZ Medium 381) Composition: Agar 20.0 g/l NaCl 10.0 g/l Tryptone 10.0 g/l Yeast extract 5.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
2359positivegrowth37mesophilic
54514positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 54514
  • oxygen tolerance: aerobe

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836830849L-arabinose+fermentation
6836827613amygdalin-fermentation
6836828053melibiose-fermentation
6836817992sucrose-fermentation
6836862345L-rhamnose+fermentation
6836830911sorbitol+fermentation
6836817268myo-inositol-fermentation
6836816899D-mannitol+fermentation
6836817634D-glucose+fermentation
683685291gelatin-hydrolysis
6836827897tryptophan+energy source
6836816199urea-hydrolysis
6836816947citrate-assimilation
6836818257ornithine-degradation
6836825094lysine-degradation
6836829016arginine-hydrolysis

metabolite production

@refChebi-IDmetaboliteproduction
6836815688acetoinno
6836835581indoleyes
6836816136hydrogen sulfideno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
6836815688acetoin-
6836835581indole+

enzymes

@refvalueactivityec
68368gelatinase-
68368tryptophan deaminase-4.1.99.1
68368urease-3.5.1.5
68368ornithine decarboxylase-4.1.1.17
68368lysine decarboxylase-4.1.1.18
68368arginine dihydrolase-3.5.3.6
68368beta-galactosidase+3.2.1.23

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGELGLUMANINOSorRHASACMELAMYARA
2359+-------+--++-++---+

Safety information

risk assessment

  • @ref: 2359
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

Genome sequences

  • @ref: 66792
  • description: Escherichia coli K802
  • accession: GCA_900097005
  • assembly level: contig
  • database: ncbi
  • NCBI tax ID: 562

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
flagellatedno60.332no
gram-positiveno98.314no
anaerobicno95.43no
aerobicyes86.331yes
halophileno92.518no
spore-formingno94.006no
glucose-fermentyes92.188yes
thermophileno98.623no
glucose-utilyes93.741no
motileyes88.549no

External links

@ref: 2359

culture collection no.: DSM 5912, ATCC 33526, CGSC 5610, NRRL B-14218, CCUG 38855

straininfo link

  • @ref: 74072
  • straininfo: 46757

Reference

@idauthorscataloguedoi/urltitle
2359Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 5912)https://www.dsmz.de/collection/catalogue/details/culture/DSM-5912
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
54514Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 38855)https://www.ccug.se/strain?id=38855
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68368Automatically annotated from API 20E
74072Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID46757.1StrainInfo: A central database for resolving microbial strain identifiers