Strain identifier
BacDive ID: 4573
Type strain:
Species: Escherichia coli
Strain Designation: Lederberg W1485, W1485
Strain history: <- NCIMB <- W. Hayes, Lederberg W1485
NCBI tax ID(s): 562 (species)
General
@ref: 2290
BacDive-ID: 4573
DSM-Number: 5695
keywords: 16S sequence, Bacteria, mesophilic
description: Escherichia coli Lederberg W1485 is a mesophilic bacterium of the family Enterobacteriaceae.
NCBI tax id
- NCBI tax id: 562
- Matching level: species
strain history
- @ref: 2290
- history: <- NCIMB <- W. Hayes, Lederberg W1485
doi: 10.13145/bacdive4573.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Enterobacterales
- family: Enterobacteriaceae
- genus: Escherichia
- species: Escherichia coli
- full scientific name: Escherichia coli (Migula 1895) Castellani and Chalmers 1919 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Bacillus coli
@ref: 2290
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Enterobacteriales, not validated
family: Enterobacteriaceae
genus: Escherichia
species: Escherichia coli
full scientific name: Escherichia coli (Migula 1895) Castellani and Chalmers 1919
strain designation: Lederberg W1485, W1485
type strain: no
Culture and growth conditions
culture medium
- @ref: 2290
- name: NZCYM-MEDIUM (DSMZ Medium 544)
- growth: yes
- link: https://mediadive.dsmz.de/medium/544
- composition: Name: NZCYM-MEDIUM (DSMZ Medium 544) Composition: Casein hydrolysate 10.0 g/l Yeast extract 5.0 g/l NaCl 5.0 g/l Maltose 2.0 g/l MgSO4 x 7 H2O 2.0 g/l Casamino acids 1.0 g/l Distilled water
culture temp
- @ref: 2290
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
68368 | 30849 | L-arabinose | + | fermentation |
68368 | 27613 | amygdalin | - | fermentation |
68368 | 28053 | melibiose | + | fermentation |
68368 | 17992 | sucrose | - | fermentation |
68368 | 62345 | L-rhamnose | + | fermentation |
68368 | 30911 | sorbitol | + | fermentation |
68368 | 17268 | myo-inositol | - | fermentation |
68368 | 16899 | D-mannitol | + | fermentation |
68368 | 17634 | D-glucose | + | fermentation |
68368 | 5291 | gelatin | - | hydrolysis |
68368 | 27897 | tryptophan | + | energy source |
68368 | 16199 | urea | - | hydrolysis |
68368 | 16947 | citrate | - | assimilation |
68368 | 18257 | ornithine | - | degradation |
68368 | 29016 | arginine | - | hydrolysis |
metabolite production
@ref | Chebi-ID | metabolite | production |
---|---|---|---|
68368 | 15688 | acetoin | no |
68368 | 35581 | indole | yes |
68368 | 16136 | hydrogen sulfide | no |
metabolite tests
@ref | Chebi-ID | metabolite | voges-proskauer-test | indole test |
---|---|---|---|---|
68368 | 15688 | acetoin | - | |
68368 | 35581 | indole | + |
enzymes
@ref | value | activity | ec |
---|---|---|---|
68368 | cytochrome oxidase | - | 1.9.3.1 |
68368 | gelatinase | - | |
68368 | tryptophan deaminase | - | 4.1.99.1 |
68368 | urease | - | 3.5.1.5 |
68368 | ornithine decarboxylase | - | 4.1.1.17 |
68368 | arginine dihydrolase | - | 3.5.3.6 |
68368 | beta-galactosidase | + | 3.2.1.23 |
API 20E
@ref | ONPG | ADH Arg | LDC Lys | ODC | CIT | H2S | URE | TDA Trp | IND | VP | GEL | GLU | MAN | INO | Sor | RHA | SAC | MEL | AMY | ARA | OX |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
2290 | + | - | - | - | - | - | - | - | + | - | - | + | + | - | + | + | - | + | - | + | |
2290 | + | - | + | - | - | - | - | - | + | - | - | + | + | - | + | + | - | + | - | + | - |
2290 | + | - | + | - | - | - | - | - | + | - | - | + | + | - | + | + | - | + | - | + | - |
2290 | + | - | + | - | - | - | - | - | + | - | - | + | + | - | + | + | - | + | - | + | - |
Safety information
risk assessment
- @ref: 2290
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 20218
- description: Escherichia coli gene for 16S rRNA, partial sequence, strain: NBRC 3302
- accession: AB680054
- length: 1467
- database: ena
- NCBI tax ID: 562
External links
@ref: 2290
culture collection no.: DSM 5695, ATCC 12435, IFO 3302, NBRC 3302, NCIMB 9481
straininfo link
- @ref: 74066
- straininfo: 35583
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
2290 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 5695) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-5695 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
68368 | Automatically annotated from API 20E | |||||
74066 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID35583.1 | StrainInfo: A central database for resolving microbial strain identifiers |