Strain identifier

BacDive ID: 454

Type strain: Yes

Species: Paraglaciecola arctica

Strain Designation: BSs20135

Strain history: <- KACC; BSs220135 <- Y.-J. Zhang, Shandong Univ., China

NCBI tax ID(s): 1128911 (species)

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General

@ref: 18109

BacDive-ID: 454

DSM-Number: 25749

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Paraglaciecola arctica BSs20135 is a mesophilic bacterium that was isolated from arctic marine sediment.

NCBI tax id

  • NCBI tax id: 1128911
  • Matching level: species

strain history

  • @ref: 18109
  • history: <- KACC; BSs220135 <- Y.-J. Zhang, Shandong Univ., China

doi: 10.13145/bacdive454.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Alteromonadales
  • family: Alteromonadaceae
  • genus: Paraglaciecola
  • species: Paraglaciecola arctica
  • full scientific name: Paraglaciecola arctica (Zhang et al. 2011) Shivaji and Reddy 2014

  • synonyms

    • @ref: 20215
    • synonym: Glaciecola arctica

@ref: 18109

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Alteromonadales

family: Alteromonadaceae

genus: Paraglaciecola

species: Paraglaciecola arctica

full scientific name: Paraglaciecola arctica (Zhang et al. 2011) Shivaji and Reddy 2014

strain designation: BSs20135

type strain: yes

Morphology

colony morphology

  • @ref: 18109
  • incubation period: 2-3 days

Culture and growth conditions

culture medium

  • @ref: 18109
  • name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/514
  • composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

culture temp

  • @ref: 18109
  • growth: positive
  • type: growth
  • temperature: 25
  • range: mesophilic

Isolation, sampling and environmental information

isolation

  • @ref: 18109
  • sample type: arctic marine sediment

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Marine
#Environmental#Aquatic#Sediment
#Condition#Psychrophilic (<10°C)
#Climate#Cold#Polar

taxonmaps

  • @ref: 69479
  • File name: preview.99_3399.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_98;96_345;97_385;98_442;99_3399&stattab=map
  • Last taxonomy: Paraglaciecola arctica
  • 16S sequence: EU365479
  • Sequence Identity:
  • Total samples: 2459
  • soil counts: 49
  • aquatic counts: 2204
  • animal counts: 116
  • plant counts: 90

Safety information

risk assessment

  • @ref: 18109
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 18109
  • description: Glaciecola arctica BSs20135 16S ribosomal RNA gene, partial sequence
  • accession: EU365479
  • length: 1497
  • database: ena
  • NCBI tax ID: 493475

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Paraglaciecola arctica BSs20135GCA_000314995contigncbi493475
66792Paraglaciecola arctica BSs201352531839188draftimg493475

External links

@ref: 18109

culture collection no.: DSM 25749, CCTCC AB 209161, KACC 14537

straininfo link

  • @ref: 70133
  • straininfo: 407309

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny21037037Glaciecola arctica sp. nov., isolated from Arctic marine sediment.Zhang YJ, Zhang XY, Mi ZH, Chen CX, Gao ZM, Chen XL, Yu Y, Chen B, Zhang YZInt J Syst Evol Microbiol10.1099/ijs.0.027326-02010Alteromonadaceae/*classification/genetics/*isolation & purification/physiology, Arctic Regions, Bacterial Typing Techniques, Base Composition, Catalase/metabolism, Cluster Analysis, Cold Temperature, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Geologic Sediments/*microbiology, Locomotion, Molecular Sequence Data, Nucleic Acid Hybridization, Oxidoreductases/metabolism, Phylogeny, Pigments, Biological/metabolism, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride/metabolismMetabolism
Phylogeny30608230Glaciecola amylolytica sp. nov., an amylase-producing bacterium isolated from seawater.Xiao YK, Yan ZF, Kim Y, Lee HM, Trinh H, Yang JE, Won KH, Yi TH, Kook MInt J Syst Evol Microbiol10.1099/ijsem.0.0032222019Alteromonadaceae/*classification/isolation & purification, Amylases, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Seawater/*microbiology, Sequence Analysis, DNA, Ubiquinone/chemistryTranscriptome
Phylogeny32687464Paraglaciecola marina sp. nov., isolated from marine alga (Sargassum natans (L.) Gaillon).Wang Y, Zhang Y, Liu T, Zhu X, Ma J, Su X, Kang J, Guo CInt J Syst Evol Microbiol10.1099/ijsem.0.0041322020Alteromonadaceae/*classification/isolation & purification, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sargassum/*microbiology, Seawater/microbiology, Sequence Analysis, DNA, Ubiquinone/chemistryTranscriptome

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
18109Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 25749)https://www.dsmz.de/collection/catalogue/details/culture/DSM-25749
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
70133Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID407309.1StrainInfo: A central database for resolving microbial strain identifiers