Strain identifier

BacDive ID: 450

Type strain: Yes

Species: Alteromonas genovensis

Strain history: <- CCUG <- I. Vandecandelaere, LMG

NCBI tax ID(s): 471225 (species)

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General

@ref: 17399

BacDive-ID: 450

DSM-Number: 23844

keywords: genome sequence, 16S sequence, Bacteria, aerobe, moderately halophilic, heterotroph, mesophilic, Gram-negative, motile, rod-shaped, colony-forming

description: Alteromonas genovensis DSM 23844 is an aerobe, moderately halophilic, heterotroph bacterium that forms circular colonies and was isolated from marine electroactive biofilm.

NCBI tax id

  • NCBI tax id: 471225
  • Matching level: species

strain history

  • @ref: 17399
  • history: <- CCUG <- I. Vandecandelaere, LMG

doi: 10.13145/bacdive450.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Alteromonadales
  • family: Alteromonadaceae
  • genus: Alteromonas
  • species: Alteromonas genovensis
  • full scientific name: Alteromonas genovensis Vandecandelaere et al. 2008

@ref: 17399

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Alteromonadales

family: Alteromonadaceae

genus: Alteromonas

species: Alteromonas genovensis

full scientific name: Alteromonas genovensis Vandecandelaere et al. 2008

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityflagellum arrangementconfidence
23290negative1.8 µm0.9 µmrod-shapedyesmonotrichous, polar
69480yes97.28
69480negative99.994

colony morphology

  • @ref: 23290
  • colony size: 2 mm
  • colony color: beige
  • colony shape: circular
  • incubation period: 2 days
  • medium used: MA

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
17399BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)yeshttps://mediadive.dsmz.de/medium/514Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
23290Marine agar (MA)yes

culture temp

@refgrowthtypetemperaturerange
17399positivegrowth28mesophilic
23290positivegrowth4-37
23290nogrowth40thermophilic
60537positivegrowth30mesophilic

culture pH

@refabilitytypepHPH range
23290positivegrowth6.0-8.5alkaliphile
23290positiveoptimum7.0-8.0

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
23290aerobe
60537aerobe

nutrition type

  • @ref: 23290
  • type: heterotroph

spore formation

@refspore formationconfidence
69481no100
69480no99.987

halophily

@refhalophily levelsaltgrowthtested relationconcentration
23290moderately halophilicNaClpositivegrowth2-15 %
23290NaClnogrowth1 %
23290NaClnogrowth20 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2329017128adipate-assimilation
2329022599arabinose-assimilation
2329027689decanoate-assimilation
2329016947citrate-assimilation
2329024265gluconate-assimilation
2329017234glucose-assimilation
2329025115malate-assimilation
2329017306maltose-assimilation
2329029864mannitol-assimilation
2329037684mannose-assimilation
23290506227N-acetylglucosamine-assimilation
2329018401phenylacetate-assimilation
2329016991dna-degradation
2329018186tyrosine-degradation
2329017234glucose-fermentation
2329017632nitrate-reduction
23290casein+degradation
232904853esculin+degradation
2329053426tween 80+/-assimilation
232905291gelatin+/-hydrolysis
2329028017starch+/-hydrolysis

antibiotic resistance

@refChEBImetaboliteis antibioticis resistantresistance conc.is intermediateintermediate conc.is sensitivesensitivity conc.
2329028971ampicillinyesyes25 µg
23290209807cefoxitinyesyes30 µg
232906104kanamycinyesyes30 µg
2329017833gentamicinyesyes10 µg
2329048923erythromycinyesyes15 µg

metabolite production

  • @ref: 23290
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
23290acid phosphatase+3.1.3.2
23290alkaline phosphatase+3.1.3.1
23290alpha-chymotrypsin+3.4.21.1
23290alpha-fucosidase-3.2.1.51
23290alpha-mannosidase-3.2.1.24
23290arginine dihydrolase-3.5.3.6
23290beta-galactosidase+3.2.1.23
23290beta-glucuronidase-3.2.1.31
23290catalase+1.11.1.6
23290cystine arylamidase+3.4.11.3
23290cytochrome oxidase+1.9.3.1
23290esterase (C 4)+
23290esterase lipase (C 8)+
23290leucine arylamidase+3.4.11.1
23290lipase (C 14)+/-
23290N-acetyl-beta-glucosaminidase-3.2.1.52
23290naphthol-AS-BI-phosphohydrolase+
23290trypsin+/-3.4.21.4
23290urease-3.5.1.5

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentsampling date
17399marine electroactive biofilmGenovaItalyITAEurope
23290marine electroactive biofilm grown on a stainless steel cathode
60537Marine electroactive biofilmGenovaItalyITAEurope2004-10-01

isolation source categories

Cat1Cat2Cat3
#Engineered#Industrial#Engineered product
#Environmental#Aquatic#Marine
#Environmental#Biofilm

taxonmaps

  • @ref: 69479
  • File name: preview.99_1054.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_98;96_261;97_285;98_828;99_1054&stattab=map
  • Last taxonomy: Alteromonas genovensis
  • 16S sequence: AM885866
  • Sequence Identity:
  • Total samples: 633
  • soil counts: 1
  • aquatic counts: 620
  • animal counts: 10
  • plant counts: 2

Safety information

risk assessment

  • @ref: 17399
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 17399
  • description: Alteromonas genovensis partial 16S rRNA gene, type strain LMG 24078T
  • accession: AM885866
  • length: 1501
  • database: ena
  • NCBI tax ID: 471225

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Alteromonas genovensis LMG 24078GCA_010500895contigncbi471225
66792Alteromonas genovensis strain LMG 24078471225.5wgspatric471225

GC content

@refGC-contentmethod
1739944.5
2329044.5high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
gram-positiveno99.089yes
anaerobicno98.58yes
halophileyes85.699no
spore-formingno96.991no
glucose-utilyes86.521no
aerobicyes90.231yes
flagellatedyes90.088yes
thermophileno99.558no
motileyes91.526no
glucose-fermentno87.871yes

External links

@ref: 17399

culture collection no.: DSM 23844, CCUG 55340, LMG 24078

straininfo link

  • @ref: 70129
  • straininfo: 307691

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny18984698Alteromonas genovensis sp. nov., isolated from a marine electroactive biofilm and emended description of Alteromonas macleodii Baumann et al. 1972 (approved lists 1980).Vandecandelaere I, Nercessian O, Segaert E, Achouak W, Mollica A, Faimali M, De Vos P, Vandamme PInt J Syst Evol Microbiol10.1099/ijs.0.65691-02008Alteromonas/*classification/genetics/isolation & purification/physiology, Bacterial Typing Techniques, Base Composition, Biofilms/*growth & development, DNA Fingerprinting, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Electrodes/*microbiology, Genes, rRNA, Genotype, Italy, Molecular Sequence Data, Phenotype, Phylogeny, Polymerase Chain Reaction/methods, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Species Specificity, Stainless SteelGenetics
Phylogeny19390988Alteromonas halophila sp. nov., a new moderately halophilic bacterium isolated from a sea anemone.Chen YG, Xiao HD, Tang SK, Zhang YQ, Borrathybay E, Cui XL, Li WJ, Liu YQAntonie Van Leeuwenhoek10.1007/s10482-009-9341-82009Alteromonas/classification/genetics/*isolation & purification/metabolism, Animals, China, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Sea Anemones/*microbiology, Seawater/*microbiology, Sodium Chloride/*metabolismMetabolism
Phylogeny32614764Alteromonas profundi sp. nov., isolated from the Indian Ocean.Shen X, Zhu S, Dong B, Chen Y, Xue Z, Ren N, Chen T, Chen X, Yang J, Chen JInt J Syst Evol Microbiol10.1099/ijsem.0.0043082020Alteromonas/*classification/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Indian Ocean, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Ubiquinone/chemistryTranscriptome

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
17399Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 23844)https://www.dsmz.de/collection/catalogue/details/culture/DSM-23844
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
23290Ilse Vandecandelaere, Olivier Nercessian, Eveline Segaert, Wafa Achouak, Alfonso Mollica, Marco Faimali, Paul De Vos, Peter Vandamme10.1099/ijs.0.65691-0Alteromonas genovensis sp. nov., isolated from a marine electroactive biofilm and emended description of Alteromonas macleodii Baumann et al. 1972 (Approved Lists 1980)IJSEM 58: 2589-2596 200818984698
60537Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 55340)https://www.ccug.se/strain?id=55340
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
70129Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID307691.1StrainInfo: A central database for resolving microbial strain identifiers