Strain identifier

BacDive ID: 4435

Type strain: No

Species: Escherichia coli

Strain Designation: 113-3, 113-3 Davis

Strain history: CIP <- 1954, Y. Raoul, Fac. Pharmacie, Paris, France <- B.D. Davis: strain 113-3

NCBI tax ID(s): 562 (species)

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General

@ref: 920

BacDive-ID: 4435

DSM-Number: 1900

keywords: Bacteria, facultative anaerobe, mesophilic, Gram-negative, rod-shaped

description: Escherichia coli 113-3 is a facultative anaerobe, mesophilic, Gram-negative bacterium of the family Enterobacteriaceae.

NCBI tax id

  • NCBI tax id: 562
  • Matching level: species

strain history

@refhistory
920<- R. Walther <- ATCC <- P.R. Burkholder, 113-3 Davis
118687CIP <- 1954, Y. Raoul, Fac. Pharmacie, Paris, France <- B.D. Davis: strain 113-3

doi: 10.13145/bacdive4435.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Enterobacteriaceae
  • genus: Escherichia
  • species: Escherichia coli
  • full scientific name: Escherichia coli (Migula 1895) Castellani and Chalmers 1919 (Approved Lists 1980)

  • synonyms

    • @ref: 20215
    • synonym: Bacillus coli

@ref: 920

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacteriales, not validated

family: Enterobacteriaceae

genus: Escherichia

species: Escherichia coli

full scientific name: Escherichia coli (Migula 1895) Castellani and Chalmers 1919

strain designation: 113-3, 113-3 Davis

type strain: no

Morphology

cell morphology

  • @ref: 118687
  • gram stain: negative
  • cell shape: rod-shaped

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
920NUTRIENT AGAR (DSMZ Medium 1)yeshttps://mediadive.dsmz.de/medium/1Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
41177MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
118687CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
920positivegrowth37mesophilic
41177positivegrowth30mesophilic
118687positivegrowth30-41
118687nogrowth5psychrophilic
118687nogrowth10psychrophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 118687
  • oxygen tolerance: facultative anaerobe

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836830849L-arabinose+fermentation
6836827613amygdalin-fermentation
6836828053melibiose+fermentation
6836817992sucrose+fermentation
6836862345L-rhamnose+fermentation
6836830911sorbitol+fermentation
6836817268myo-inositol-fermentation
6836816899D-mannitol+fermentation
6836817634D-glucose+fermentation
683685291gelatin-hydrolysis
6836827897tryptophan+energy source
6836816199urea-hydrolysis
6836816947citrate-assimilation
6836818257ornithine+degradation
6836825094lysine+degradation
6836829016arginine-hydrolysis
11868729864mannitol+fermentation
11868716947citrate-carbon source
11868717234glucose+fermentation
11868717716lactose+fermentation
11868717632nitrate+reduction
11868716301nitrite+reduction
11868715792malonate-assimilation
118687132112sodium thiosulfate-builds gas from

metabolite production

@refChebi-IDmetaboliteproduction
6836815688acetoinno
6836835581indoleyes
6836816136hydrogen sulfideno
11868735581indoleyes

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole testmethylred-test
6836815688acetoin-
6836835581indole+
11868715688acetoin-
11868717234glucose+

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase-3.2.1.21
68382alpha-glucosidase+3.2.1.20
68382beta-glucuronidase+3.2.1.31
68382beta-galactosidase+3.2.1.23
68382alpha-galactosidase+3.2.1.22
68382naphthol-AS-BI-phosphohydrolase+
68382acid phosphatase+3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin+3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase+
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)-
68382esterase (C 4)+
68382alkaline phosphatase+3.1.3.1
68368cytochrome oxidase-1.9.3.1
68368gelatinase-
68368tryptophan deaminase-4.1.99.1
68368urease-3.5.1.5
68368ornithine decarboxylase+4.1.1.17
68368lysine decarboxylase+4.1.1.18
68368arginine dihydrolase-3.5.3.6
68368beta-galactosidase+3.2.1.23
118687oxidase-
118687beta-galactosidase+3.2.1.23
118687alcohol dehydrogenase-1.1.1.1
118687gelatinase-
118687catalase+1.11.1.6
118687lysine decarboxylase+4.1.1.18
118687ornithine decarboxylase+4.1.1.17
118687tryptophan deaminase-
118687urease-3.5.1.5

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
118687-++--++-+-++++++----

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGELGLUMANINOSorRHASACMELAMYARAOX
920+-++----+--++-++++-+
920+-++----+--++-++++-+
920+-++----+--++-++++-+-

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
118687+++++-++++++++++++--++-++----+-+-+--+-+----+++-+++----++-+-+++------++--++-++--+++++-----++++++-+-+

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
9201Risk group (German classification)
1186871Risk group (French classification)

External links

@ref: 920

culture collection no.: DSM 1900, ATCC 11105, CIP 54.7, IFO 3366, CIP 55.116

straininfo link

  • @ref: 73925
  • straininfo: 35327

Reference

@idauthorscataloguedoi/urltitle
920Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 1900)https://www.dsmz.de/collection/catalogue/details/culture/DSM-1900
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
41177Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/17445
68368Automatically annotated from API 20E
68382Automatically annotated from API zym
73925Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID35327.1StrainInfo: A central database for resolving microbial strain identifiers
118687Curators of the CIPCollection of Institut Pasteur (CIP 54.7)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2054.7