Strain identifier

BacDive ID: 4428

Type strain: No

Species: Escherichia coli

Strain Designation: W

Culture col. no.: CCUG 1640, DSM 1116, ATCC 9637, CCM 2024, NCIB 8666, NRRL B-766

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 564

BacDive-ID: 4428

DSM-Number: 1116

keywords: antibiotic resistance, mesophilic, Bacteria, genome sequence

description: Escherichia coli W is a mesophilic bacterium that has multiple antibiotic resistances.

strain history: <- ATCC <- S.A. Waksman, strain W

doi: 10.13145/bacdive4428.20201210.5

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/proteobacteria
  • domain: Bacteria
  • phylum: Proteobacteria
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Enterobacteriaceae
  • genus: Escherichia
  • species: Escherichia coli
  • full scientific name: Escherichia coli (Migula 1895) Castellani and Chalmers 1919 (Approved Lists 1980)
  • synonyms

    • @ref: 20215
    • synonym: Bacillus coli

@ref: 564

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacteriales, not validated

family: Enterobacteriaceae

genus: Escherichia

species: Escherichia coli

full scientific name: Escherichia coli (Migula 1895) Castellani and Chalmers 1919

strain designation: W

type strain: no

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
564Nutrient agar (NA)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium1.pdf
41814MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)

culture temp

@refgrowthtypetemperaturerange
564positivegrowth37mesophilic
41814positivegrowth30mesophilic

Physiology and metabolism

antibiogram

@refmediumPenicillin Goxacillinampicillinticarcillinmezlocillincefalotincefazolincefotaximeaztreonamimipenemtetracyclinechloramphenicolgentamycinamikacinvancomycinerythromycinlincomycinofloxacinnorfloxacincolistinpipemidic acidnitrofurantoinbacitracinpolymyxin bkanamycinneomycindoxycyclineceftriaxoneclindamycinfosfomycinmoxifloxacinlinezolidnystatinquinupristin/dalfopristinteicoplaninpiperacillin/tazobactamincubation temperatureincubation timeoxygen condition
564Mueller-Hinton Agar0018262022283432-34322426242601003434-3612-1426220142220183203430-32000022
564Mueller-Hinton Agar01020262022283432322822-242424120034361626-282401624222032-3403630600020-22371aerob
564Mueller-Hinton Agar00202620-2222-2428363232-3426-28262424-260603236142822-24016222020-2232-3403630-32000020-2237aerob
564Mueller-Hinton Agar001826-2820222834-363432-3424-2624-2624-2624-2608034-3638-4014282201434202036036-3832000022
564Mueller-Hinton Agar00182620202832-343232262422240803436142620-22016242020320343000002237aerob
564Mueller-Hinton Agar00182620202832-343232262422240803436142620-22016242020320343000002237aerob
564Mueller Hinton001824202026-2830303022-242220-222206030-3232-34122620016221818300322800002037aerob

compound production

@refcompound
564cephalosporins
564diaminopimelate decarboxylase
564glutamine synthetase
564hydrogenase
564penicillin acylase
5646-amino penicillanic acid (amides)
5646 aminopenicillanic acid (amides)

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGELGLUMANINOSorRHASACMELAMYARAOX
564+-++----+--++-++++-+-
564+-++----+--++-++++-+
564+-++----+--++-++++-+-

API ID32E

@refODCADH ArgLDC LysURELARLGAT5KGLIPRPbeta GLUMANMALADOPLEbeta GURMNTINDbeta NAGbeta GALGLUSACLARADARLalpha GLUalpha GALTRERHAINOCELSORalphaMALAspA
44398+-+--+--+-++--+-+-++-+--+++-----

Safety information

risk assessment

  • @ref: 564
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Escherichia coli W ATCC 9637GCA_008868305contigncbi566546
66792Escherichia coli VKPM B-10182562.5049wgspatric562
66792Escherichia coli W566546.4completepatric566546
66792Escherichia coli W566546.53plasmidpatric566546
66792Escherichia coli W566546.30completepatric566546
66792Escherichia coli W566546.54plasmidpatric566546
66792Escherichia coli W566546.55plasmidpatric566546
66792Escherichia coli W566546.52plasmidpatric566546
66792Escherichia coli W strain ATCC 9637566546.88wgspatric566546
66792Escherichia coli strain W; ATCC 9637562.24207plasmidpatric562

GC content

  • @ref: 564
  • GC-content: 51.6

External links

@ref: 564

culture collection no.: CCUG 1640, DSM 1116, ATCC 9637, CCM 2024, NCIB 8666, NRRL B-766

straininfo link

@refpassport
20218http://www.straininfo.net/strains/11410
20218http://www.straininfo.net/strains/11407
20218http://www.straininfo.net/strains/11408
20218http://www.straininfo.net/strains/11412
20218http://www.straininfo.net/strains/11413

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
564Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 1116)https://www.dsmz.de/collection/catalogue/details/culture/DSM-1116
20215D.Gleim, M.Kracht, N.Weiss et. al.http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.htmlProkaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
41814Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/11634
44398Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 1640)https://www.ccug.se/strain?id=1640
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)