Strain identifier

BacDive ID: 442

Type strain: Yes

Species: Alishewanella jeotgali

Strain Designation: MS1

Strain history: <- JW Bae, KRIBB

NCBI tax ID(s): 1129374 (strain), 545533 (species)

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General

@ref: 17482

BacDive-ID: 442

DSM-Number: 24035

keywords: genome sequence, 16S sequence, Bacteria, facultative anaerobe, mesophilic, Gram-negative, motile, rod-shaped

description: Alishewanella jeotgali MS1 is a facultative anaerobe, mesophilic, Gram-negative bacterium that was isolated from gajami sikhae , a traditional fermented Korean food.

NCBI tax id

NCBI tax idMatching level
1129374strain
545533species

strain history

@refhistory
17482<- KCTC <- J.-W. Bae, Korea Research Institute of Bioscience & Biotechnol. (KRIBB), Daejon, Republic of Korea; MS1
67770J.-W. Bae MS1.
67771<- JW Bae, KRIBB

doi: 10.13145/bacdive442.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Chromatiales
  • family: Chromatiaceae
  • genus: Alishewanella
  • species: Alishewanella jeotgali
  • full scientific name: Alishewanella jeotgali Kim et al. 2009

@ref: 17482

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Alteromonadales

family: Chromatiaceae

genus: Alishewanella

species: Alishewanella jeotgali

full scientific name: Alishewanella jeotgali Kim et al. 2009

strain designation: MS1

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityconfidence
29144negative2-6 µm1 µmrod-shapedyes
67771negative
69480yes96.099
69480negative99.938

multimedia

  • @ref: 17482
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_24035.jpg
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

  • @ref: 17482
  • name: REACTIVATION WITH LIQUID MEDIUM (DSMZ Medium 535b)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/535b
  • composition: Name: REACTIVATION WITH LIQUID MEDIUM (DSMZ Medium 535b) Composition: Trypticase soy broth 30.0 g/l Casein peptone 17.0 g/l Agar 15.0 g/l NaCl 5.0 g/l Soy peptone 3.0 g/l K2HPO4 2.5 g/l D(+)-Glucose 2.5 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
17482positivegrowth28mesophilic
29144positivegrowth04-40
29144positiveoptimum37mesophilic
67770positivegrowth37mesophilic
67771positivegrowth30mesophilic

culture pH

@refabilitytypepHPH range
29144positivegrowth6.5-9.5alkaliphile
29144positiveoptimum8

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
29144facultative anaerobe
67771aerobe

spore formation

@refspore formationconfidence
69481no100
69480no99.983

halophily

@refsaltgrowthtested relationconcentration
29144NaClpositivegrowth1.0-2.0 %
29144NaClpositiveoptimum1 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2914417234glucose+carbon source
2914428087glycogen+carbon source
2914417306maltose+carbon source
2914417992sucrose+carbon source
2914427082trehalose+carbon source
291444853esculin+hydrolysis
2914417632nitrate+reduction

enzymes

@refvalueactivityec
29144acid phosphatase+3.1.3.2
29144alkaline phosphatase+3.1.3.1
29144catalase+1.11.1.6
29144gelatinase+
29144cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinent
17482gajami sikhae (jeotgal), a traditional fermented Korean foodRepublic of KoreaKORAsia
67770Gajami sikhae (jeotgal), a traditional Korean fermented seafood
67771From Flatfish Sik HaeRepublic of KoreaKORAsia

isolation source categories

Cat1Cat2Cat3
#Engineered#Food production#Seafood
#Engineered#Food production#Fermented

taxonmaps

  • @ref: 69479
  • File name: preview.99_111.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_43;96_86;97_91;98_100;99_111&stattab=map
  • Last taxonomy: Alishewanella jeotgali
  • 16S sequence: EU817498
  • Sequence Identity:
  • Total samples: 320
  • soil counts: 7
  • aquatic counts: 197
  • animal counts: 113
  • plant counts: 3

Safety information

risk assessment

  • @ref: 17482
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 17482
  • description: Alishewanella jeotgali strain MS1 16S ribosomal RNA gene, partial sequence
  • accession: EU817498
  • length: 1490
  • database: ena
  • NCBI tax ID: 1129374

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Alishewanella jeotgali KCTC 224291129374.4wgspatric1129374
66792Alishewanella jeotgali KCTC 224292513237355draftimg1129374
67770Alishewanella jeotgali KCTC 22429GCA_000245735contigncbi1129374

GC content

@refGC-contentmethod
1748253.6thermal denaturation, midpoint method (Tm)
2914453.6
6777050.66genome sequence analysis

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileyes89.607yes
flagellatedyes74.401no
gram-positiveno99.163yes
anaerobicno95.486yes
halophileno90.85yes
spore-formingno94.514no
glucose-utilyes85.669yes
aerobicyes85.062no
thermophileno98.981yes
glucose-fermentno78.795no

External links

@ref: 17482

culture collection no.: DSM 24035, JCM 15561, KCTC 22429, CGMCC 1.10666

straininfo link

  • @ref: 70121
  • straininfo: 364110

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny19620373Alishewanella jeotgali sp. nov., isolated from traditional fermented food, and emended description of the genus Alishewanella.Kim MS, Roh SW, Nam YD, Chang HW, Kim KH, Jung MJ, Choi JH, Park EJ, Bae JWInt J Syst Evol Microbiol10.1099/ijs.0.007260-02009Alteromonadaceae/*classification/genetics/*isolation & purification/physiology, Bacterial Typing Techniques, Catalase/metabolism, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, *Food Microbiology, Hydrogen-Ion Concentration, Korea, Locomotion, Methylamines/metabolism, Molecular Sequence Data, Nitrates/metabolism, Nucleic Acid Hybridization, Oxidation-Reduction, Oxidoreductases/metabolism, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride/metabolism, Temperature, Thiosulfates/metabolismMetabolism
Genetics22461542Genome sequence of extracellular-protease-producing Alishewanella jeotgali isolated from traditional Korean fermented seafood.Jung J, Chun J, Park WJ Bacteriol10.1128/JB.00153-122012Alteromonadaceae/*genetics, Animals, Base Sequence, Fermentation, Fishes, *Food Microbiology, Gene Expression Regulation, Bacterial, *Genome, Bacterial, Molecular Sequence Data, Peptide Hydrolases/*metabolism, Republic of Korea, Seafood/*microbiologyBiotechnology

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
17482Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 24035)https://www.dsmz.de/collection/catalogue/details/culture/DSM-24035
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
29144Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2556828776041
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
70121Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID364110.1StrainInfo: A central database for resolving microbial strain identifiers