Strain identifier

BacDive ID: 441

Type strain: Yes

Species: Alishewanella aestuarii

Strain Designation: B11

Strain history: <- SW Roh, KRIBB

NCBI tax ID(s): 453835 (species)

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General

@ref: 8108

BacDive-ID: 441

DSM-Number: 19476

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, motile, rod-shaped

description: Alishewanella aestuarii B11 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from tidal flat sediment.

NCBI tax id

  • NCBI tax id: 453835
  • Matching level: species

strain history

@refhistory
8108<- S. W. Roh, Korea Res. Inst. Biosci. & Biotechnol. (KRIBB), Taejon, South Korea; B11
67771<- SW Roh, KRIBB

doi: 10.13145/bacdive441.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Chromatiales
  • family: Chromatiaceae
  • genus: Alishewanella
  • species: Alishewanella aestuarii
  • full scientific name: Alishewanella aestuarii Roh et al. 2009

@ref: 8108

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Alteromonadales

family: Chromatiaceae

genus: Alishewanella

species: Alishewanella aestuarii

full scientific name: Alishewanella aestuarii Roh et al. 2009

strain designation: B11

type strain: yes

Morphology

cell morphology

@refgram staincell shapemotility
32532negativerod-shapedyes
67771negative

Culture and growth conditions

culture medium

  • @ref: 8108
  • name: CASO AGAR (MERCK 105458) (DSMZ Medium 220)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/220
  • composition: Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
8108positivegrowth28mesophilic
32532positivegrowth18-44
32532positiveoptimum37mesophilic
67771positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 67771
  • oxygen tolerance: aerobe

halophily

@refsaltgrowthtested relationconcentration
32532NaClpositivegrowth<5 %
32532NaClpositiveoptimum5 %

observation

  • @ref: 32532
  • observation: aggregates in clumps

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3253217306maltose+carbon source
3253217632nitrate+reduction

enzymes

@refvalueactivityec
32532acid phosphatase+3.1.3.2
32532alkaline phosphatase+3.1.3.1
32532catalase+1.11.1.6
32532gelatinase+
32532cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
8108tidal flat sedimentYeosuRepublic of KoreaKORAsia
67771From flat tidalRepublic of KoreaKORAsia

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Tidal flat
#Environmental#Terrestrial#Sediment

taxonmaps

  • @ref: 69479
  • File name: preview.99_4194.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_43;96_86;97_91;98_100;99_4194&stattab=map
  • Last taxonomy: Alishewanella
  • 16S sequence: EF660759
  • Sequence Identity:
  • Total samples: 1025
  • soil counts: 58
  • aquatic counts: 585
  • animal counts: 351
  • plant counts: 31

Safety information

risk assessment

  • @ref: 8108
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 8108
  • description: Alishewanella aestuarii B11 16S ribosomal RNA gene, partial sequence
  • accession: EF660759
  • length: 1358
  • database: ena
  • NCBI tax ID: 1197174

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Alishewanella aestuarii B11GCA_000280055contigncbi1197174
66792Alishewanella aestuarii B111197174.4wgspatric1197174
66792Alishewanella aestuarii B112531839095draftimg1197174

GC content

  • @ref: 32532
  • GC-content: 49.5

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileyes90.752yes
gram-positiveno99yes
anaerobicno94.173yes
aerobicyes88.489yes
halophileno84.917no
spore-formingno93.968no
glucose-utilyes83.266no
flagellatedyes76.239no
thermophileno98.578yes
glucose-fermentno79.79no

External links

@ref: 8108

culture collection no.: DSM 19476, KCTC 22051

straininfo link

  • @ref: 70120
  • straininfo: 360704

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny19196789Alishewanella aestuarii sp. nov., isolated from tidal flat sediment, and emended description of the genus Alishewanella.Roh SW, Nam YD, Chang HW, Kim KH, Kim MS, Oh HM, Bae JWInt J Syst Evol Microbiol10.1099/ijs.0.65643-02009Alteromonadaceae/chemistry/*classification/genetics/isolation & purification, Fatty Acids/analysis, Geologic Sediments/*microbiology, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Species SpecificityGenetics
Genetics22965096Genome sequence of pectin-degrading Alishewanella aestuarii strain B11(T), isolated from tidal flat sediment.Jung J, Choi S, Chun J, Park WJ Bacteriol10.1128/JB.01255-122012Alteromonadaceae/*classification/*genetics, *Genome, Bacterial, Geologic Sediments/microbiology, Molecular Sequence DataPhylogeny

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
8108Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19476)https://www.dsmz.de/collection/catalogue/details/culture/DSM-19476
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
32532Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2875028776041
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
70120Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID360704.1StrainInfo: A central database for resolving microbial strain identifiers