Strain identifier

BacDive ID: 4409

Type strain: No

Species: Escherichia coli

Strain history: <- ATCC <- NCTC <- Lister Inst., London

NCBI tax ID(s): 662541 (strain), 562 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 34

BacDive-ID: 4409

DSM-Number: 301

keywords: human pathogen, mesophilic, Bacteria

description: Escherichia coli DSM 301 is a mesophilic human pathogen of the family Enterobacteriaceae.

NCBI tax id

NCBI tax idMatching level
562species
662541strain

strain history: <- ATCC <- NCTC <- Lister Inst., London

doi: 10.13145/bacdive4409.20220920.7

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Enterobacteriaceae
  • genus: Escherichia
  • species: Escherichia coli
  • full scientific name: Escherichia coli (Migula 1895) Castellani and Chalmers 1919 (Approved Lists 1980)
  • synonyms

    • @ref: 20215
    • synonym: Bacillus coli

@ref: 34

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacteriales, not validated

family: Enterobacteriaceae

genus: Escherichia

species: Escherichia coli

full scientific name: Escherichia coli (Migula 1895) Castellani and Chalmers 1919

type strain: no

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
34NUTRIENT AGAR (DSMZ Medium 1)yeshttps://bacmedia.dsmz.de/medium/1Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
34797MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)

culture temp

@refgrowthtypetemperaturerange
34positivegrowth37mesophilic
34797positivegrowth30mesophilic

Physiology and metabolism

compound production

@refcompound
34arginine decarboxylase
34glutamate decarboxylase
34histidine decarboxylase

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836830849L-arabinose+fermentation
6836827613amygdalin-fermentation
6836828053melibiose+fermentation
6836817992sucrose-fermentation
6836862345L-rhamnose-fermentation
6836830911sorbitol+fermentation
6836817268myo-inositol-fermentation
6836816899D-mannitol+fermentation
6836817634D-glucose+fermentation
683685291gelatin-hydrolysis
6836827897tryptophan+energy source
6836816199urea-hydrolysis
6836816947citrate-assimilation
6836818257ornithine-degradation
6836825094lysine-degradation
6836829016arginine-hydrolysis

metabolite production

@refChebi-IDmetaboliteproduction
6836815688acetoinno
6836835581indoleyes
6836816136hydrogen sulfideno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
6836815688acetoin-
6836835581indole+

enzymes

@refvalueactivityec
68368cytochrome oxidase-1.9.3.1
68368gelatinase-
68368tryptophan deaminase-4.1.99.1
68368urease-3.5.1.5
68368ornithine decarboxylase-4.1.1.17
68368lysine decarboxylase-4.1.1.18
68368arginine dihydrolase-3.5.3.6
68368beta-galactosidase+3.2.1.23

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGELGLUMANINOSorRHASACMELAMYARAOX
34+-------+--++-+--+-+
34+-------+--++-+--+-+-
34+-------+--++-+--+-+-

Safety information

risk assessment

  • @ref: 34
  • pathogenicity human: yes
  • pathogenicity animal: yes
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

External links

@ref: 34

culture collection no.: DSM 301, ATCC 4157, CIP 61.11, NCIB 86, NCTC 86

straininfo link

@refpassport
20218http://www.straininfo.net/strains/150772
20218http://www.straininfo.net/strains/94082
20218http://www.straininfo.net/strains/233921
20218http://www.straininfo.net/strains/94085
20218http://www.straininfo.net/strains/150773

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
34Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 301)https://www.dsmz.de/collection/catalogue/details/culture/DSM-301
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
34797Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/9928
68368Automatically annotated from API 20E