Strain identifier
BacDive ID: 4408
Type strain: 
Species: Erwinia typographi
Strain Designation: Y1
Strain history: <- V. Skrodenyte-Arbaciauskiene, Inst. Ecology, Vilnius Univ., Lithuania; Y1
NCBI tax ID(s): 371042 (species)
version 8.1 (current version)
General
@ref: 16458
BacDive-ID: 4408
DSM-Number: 22678
keywords: 16S sequence, Bacteria, facultative anaerobe, mesophilic, Gram-negative, motile, rod-shaped
description: Erwinia typographi Y1 is a facultative anaerobe, mesophilic, Gram-negative bacterium that was isolated from gut of adult bark beetle Ips typographus.
NCBI tax id
- NCBI tax id: 371042
- Matching level: species
strain history
- @ref: 16458
- history: <- V. Skrodenyte-Arbaciauskiene, Inst. Ecology, Vilnius Univ., Lithuania; Y1
doi: 10.13145/bacdive4408.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Enterobacterales
- family: Erwiniaceae
- genus: Erwinia
- species: Erwinia typographi
- full scientific name: Erwinia typographi Skrodenyt?-Arba?iauskien? et al. 2012
@ref: 16458
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Enterobacteriales, not validated
family: Erwiniaceae
genus: Erwinia
species: Erwinia typographi
full scientific name: Erwinia typographi Skrodenyt?-Arba?iauskien? et al. 2012
strain designation: Y1
type strain: yes
Morphology
cell morphology
- @ref: 30177
- gram stain: negative
- cell length: 02-04 µm
- cell width: 0.7-0.8 µm
- cell shape: rod-shaped
- motility: yes
pigmentation
- @ref: 30177
- production: yes
Culture and growth conditions
culture medium
- @ref: 16458
- name: NUTRIENT AGAR (DSMZ Medium 1)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1
- composition: Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 16458 | positive | growth | 28 | mesophilic |
| 30177 | positive | optimum | 22-36 |
Physiology and metabolism
oxygen tolerance
- @ref: 30177
- oxygen tolerance: facultative anaerobe
spore formation
- @ref: 30177
- spore formation: no
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 30177 | 22599 | arabinose | + | carbon source |
| 30177 | 28757 | fructose | + | carbon source |
| 30177 | 28260 | galactose | + | carbon source |
| 30177 | 17234 | glucose | + | carbon source |
| 30177 | 15792 | malonate | + | carbon source |
| 30177 | 29864 | mannitol | + | carbon source |
| 30177 | 37684 | mannose | + | carbon source |
| 30177 | 506227 | N-acetylglucosamine | + | carbon source |
| 30177 | 33942 | ribose | + | carbon source |
| 30177 | 27082 | trehalose | + | carbon source |
enzymes
- @ref: 30177
- value: catalase
- activity: +
- ec: 1.11.1.6
Isolation, sampling and environmental information
isolation
- @ref: 16458
- sample type: gut of adult bark beetle Ips typographus
- host species: Ips typographus
- country: Lithuania
- origin.country: LTU
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Arthropoda | #Insecta |
| #Host Body-Site | #Gastrointestinal tract | #Stomach |
Safety information
risk assessment
- @ref: 16458
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 16458
- description: Erwinia typographi strain Y1 16S ribosomal RNA gene, partial sequence
- accession: GU166291
- length: 1406
- database: ena
- NCBI tax ID: 371042
GC content
| @ref | GC-content | method |
|---|---|---|
| 16458 | 49.1 | high performance liquid chromatography (HPLC) |
| 30177 | 49.1 |
External links
@ref: 16458
culture collection no.: DSM 22678, LMG 25347
straininfo link
- @ref: 73899
- straininfo: 362992
literature
- topic: Phylogeny
- Pubmed-ID: 21669921
- title: Erwinia typographi sp. nov., isolated from bark beetle (Ips typographus) gut.
- authors: Skrodenyte-Arbaciauskiene V, Radziute S, Stunzenas V, Buda V
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.030304-0
- year: 2011
- mesh: Acyclic Monoterpenes, Alkenes/chemistry, Animals, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Erwinia/*classification/genetics/isolation & purification, Fatty Acids/chemistry, Gastrointestinal Tract/microbiology, Genes, Bacterial, Lithuania, Molecular Sequence Data, Monoterpenes/chemistry, Multilocus Sequence Typing, Nucleic Acid Hybridization, *Phylogeny, Picea, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Weevils/*microbiology
- topic2: Genetics
Reference
| @id | authors | catalogue | doi/url | title | ID_cross_reference | pubmed |
|---|---|---|---|---|---|---|
| 16458 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 22678) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-22678 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 30177 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 26526 | 28776041 | |
| 73899 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID362992.1 | StrainInfo: A central database for resolving microbial strain identifiers |