Strain identifier

BacDive ID: 4390

Type strain: Yes

Species: Erwinia tracheiphila

Strain Designation: 52

Strain history: <- NCPPB <- <- S. Shanmugasundaram; 52

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 15562

BacDive-ID: 4390

DSM-Number: 21139

keywords: plant pathogen, mesophilic, Bacteria, 16S sequence, genome sequence

description: Erwinia tracheiphila 52 is a mesophilic plant pathogen that was isolated from Curcubita melo.

NCBI tax id

NCBI tax idMatching level
65700species
1121872strain

strain history: <- NCPPB <- <- S. Shanmugasundaram; 52

doi: 10.13145/bacdive4390.20220920.7

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Erwiniaceae
  • genus: Erwinia
  • species: Erwinia tracheiphila
  • full scientific name: Erwinia tracheiphila (Smith 1895) Bergey et al. 1923 (Approved Lists 1980)
  • synonyms

    • @ref: 20215
    • synonym: Bacillus tracheiphilus

@ref: 15562

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacteriales, not validated

family: Erwiniaceae

genus: Erwinia

species: Erwinia tracheiphila

full scientific name: Erwinia tracheiphila (Smith 1895) Bergey et al. 1923 emend. Hauben et al. 1998

strain designation: 52

type strain: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
15562NUTRIENT AGAR (DSMZ Medium 1)yeshttps://bacmedia.dsmz.de/medium/1Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
35249MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)

culture temp

@refgrowthtypetemperaturerange
15562positivegrowth28mesophilic
35249positivegrowth30mesophilic

Isolation, sampling and environmental information

isolation

  • @ref: 15562
  • sample type: Curcubita melo
  • host species: Curcubita melo
  • country: USA
  • origin.country: USA
  • continent: North America

isolation source categories

  • Cat1: #Host
  • Cat2: #Plants
  • Cat3: #Herbaceous plants (Grass,Crops)

Safety information

risk assessment

  • @ref: 15562
  • pathogenicity plant: yes
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 15562
  • description: Erwinia tracheiphila 16S rRNA gene
  • accession: Y13250
  • length: 1536
  • database: ena
  • NCBI tax ID: 65700

Genome sequences

  • @ref: 66792
  • description: Erwinia tracheiphila DSM 21139
  • accession: 2576861418
  • assembly level: draft
  • database: img
  • NCBI tax ID: 1121872

External links

@ref: 15562

culture collection no.: DSM 21139, CFPB 2355, CIP 105205, LMG 2906, NCPPB 2452

straininfo link

@refpassport
20218http://www.straininfo.net/strains/150675
20218http://www.straininfo.net/strains/11289
20218http://www.straininfo.net/strains/11290

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
15562Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 21139)https://www.dsmz.de/collection/catalogue/details/culture/DSM-21139
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
35249Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/17198
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880