Strain identifier
BacDive ID: 439
Type strain: 
Species: Marisediminitalea aggregata
Strain Designation: WH169
Strain history: <- X.-H. Zhang, Ocean Univ. China, Qingdao, P. R. China; CGMCC 1.8995 <- H. Wang
NCBI tax ID(s): 634436 (species)
version 8.1 (current version)
General
@ref: 16575
BacDive-ID: 439
DSM-Number: 23094
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, motile
description: Marisediminitalea aggregata WH169 is a mesophilic, motile bacterium that was isolated from surface seawater.
NCBI tax id
- NCBI tax id: 634436
- Matching level: species
strain history
- @ref: 16575
- history: <- X.-H. Zhang, Ocean Univ. China, Qingdao, P. R. China; CGMCC 1.8995 <- H. Wang
doi: 10.13145/bacdive439.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Alteromonadales
- family: Alteromonadaceae
- genus: Marisediminitalea
- species: Marisediminitalea aggregata
- full scientific name: Marisediminitalea aggregata (Wang et al. 2010) Zhang et al. 2020
synonyms
- @ref: 20215
- synonym: Aestuariibacter aggregatus
@ref: 16575
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Alteromonadales
family: Alteromonadaceae
genus: Marisediminitalea
species: Marisediminitalea aggregata
full scientific name: Marisediminitalea aggregata (Wang et al. 2010) Zhang et al. 2020
strain designation: WH169
type strain: yes
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | yes | 96.255 | |
| 69480 | 99.987 | negative |
Culture and growth conditions
culture medium
- @ref: 16575
- name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
- growth: yes
- link: https://mediadive.dsmz.de/medium/514
- composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
culture temp
- @ref: 16575
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 100 |
| 69480 | no | 99.693 |
Isolation, sampling and environmental information
isolation
- @ref: 16575
- sample type: surface seawater
- geographic location: Yellow Sea, coastal region, 33° 59.827' N 123° 0.123' E
- country: China
- origin.country: CHN
- continent: Asia
- latitude: 33.9972
- longitude: 123.002
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Marine |
| #Environmental | #Aquatic | #Surface water |
taxonmaps
- @ref: 69479
- File name: preview.99_37435.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_98;96_17799;97_21937;98_27542;99_37435&stattab=map
- Last taxonomy: Alteromonadaceae
- 16S sequence: FJ847832
- Sequence Identity:
- Total samples: 3414
- soil counts: 39
- aquatic counts: 3075
- animal counts: 270
- plant counts: 30
Safety information
risk assessment
- @ref: 16575
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 16575
- description: Aestuariibacter aggregatus strain WH169 16S ribosomal RNA gene, partial sequence
- accession: FJ847832
- length: 1232
- database: ena
- NCBI tax ID: 634436
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Marisediminitalea aggregata CGMCC 1.8995 | GCA_900129565 | scaffold | ncbi | 634436 |
| 66792 | Aestuariibacter aggregatus strain CGMCC 1.8995 | 634436.3 | wgs | patric | 634436 |
| 66792 | Marisediminitalea aggregata CGMCC 1.8995 | 2675903007 | draft | img | 634436 |
GC content
- @ref: 16575
- GC-content: 49.4
- method: high performance liquid chromatography (HPLC)
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| motile | yes | 92.254 | no |
| flagellated | yes | 87.272 | no |
| gram-positive | no | 99.063 | no |
| anaerobic | no | 98.968 | no |
| aerobic | yes | 84.124 | no |
| halophile | yes | 56.242 | no |
| spore-forming | no | 96.978 | no |
| thermophile | no | 99.612 | yes |
| glucose-util | yes | 91.167 | no |
| glucose-ferment | no | 81.655 | no |
External links
@ref: 16575
culture collection no.: DSM 23094, CGMCC 1.8995, LMG 25283
straininfo link
- @ref: 70118
- straininfo: 362523
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 20528939 | Aestuariibacter aggregatus sp. nov., a moderately halophilic bacterium isolated from seawater of the Yellow Sea. | Wang Y, Wang H, Liu J, Lai Q, Shao Z, Austin B, Zhang XH | FEMS Microbiol Lett | 10.1111/j.1574-6968.2010.02011.x | 2010 | Alteromonadaceae/classification/genetics/*isolation & purification/*metabolism, China, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sodium Chloride/*metabolism | Metabolism |
| Phylogeny | 31626587 | Marisediminitalea mangrovi gen. nov., sp. nov., isolated from marine mangrove sediment, and reclassification of Aestuariibacter aggregatus as Marisediminitalea aggregata comb. nov. | Zhang D, Gui J, Zheng S, Zhu X, Wu S, Tian Y, Lai Q, Xu H | Int J Syst Evol Microbiol | 10.1099/ijsem.0.003773 | 2020 | Alteromonadaceae/*classification/isolation & purification, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, *Estuaries, Fatty Acids/chemistry, Geologic Sediments/*microbiology, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Rhizophoraceae, Sequence Analysis, DNA, Ubiquinone/chemistry | Transcriptome |
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 16575 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 23094) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-23094 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
| 70118 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID362523.1 | StrainInfo: A central database for resolving microbial strain identifiers |