Strain identifier

BacDive ID: 4387

Type strain: No

Species: Erwinia amylovora

Strain history: <- ICPB <- P.A. Ark

NCBI tax ID(s): 552 (species)

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General

@ref: 12729

BacDive-ID: 4387

DSM-Number: 50901

keywords: 16S sequence, Bacteria, mesophilic, plant pathogen

description: Erwinia amylovora DSM 50901 is a mesophilic plant pathogen that was isolated from blighted apple twig .

NCBI tax id

  • NCBI tax id: 552
  • Matching level: species

strain history

  • @ref: 12729
  • history: <- ICPB <- P.A. Ark

doi: 10.13145/bacdive4387.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Erwiniaceae
  • genus: Erwinia
  • species: Erwinia amylovora
  • full scientific name: Erwinia amylovora (Burrill 1882) Winslow et al. 1920 (Approved Lists 1980)
  • synonyms

    • @ref: 20215
    • synonym: Micrococcus amylovorus

@ref: 12729

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacteriales, not validated

family: Erwiniaceae

genus: Erwinia

species: Erwinia amylovora

full scientific name: Erwinia amylovora (Burrill 1882) Winslow et al. 1920 emend. Hauben et al. 1998

type strain: no

Culture and growth conditions

culture medium

  • @ref: 12729
  • name: NUTRIENT AGAR (DSMZ Medium 1)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/1
  • composition: Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water

culture temp

  • @ref: 12729
  • growth: positive
  • type: growth
  • temperature: 26
  • range: mesophilic

Physiology and metabolism

compound production

  • @ref: 12729
  • compound: pyruvate carboxylase

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836830849L-arabinose+fermentation
6836827613amygdalin-fermentation
6836828053melibiose-fermentation
6836817992sucrose+fermentation
6836862345L-rhamnose-fermentation
6836830911sorbitol+fermentation
6836817268myo-inositol+fermentation
6836816899D-mannitol+fermentation
6836817634D-glucose+fermentation
683685291gelatin-hydrolysis
6836827897tryptophan-energy source
6836816199urea-hydrolysis
6836816947citrate-assimilation
6836818257ornithine-degradation
6836825094lysine-degradation
6836829016arginine-hydrolysis

metabolite production

@refChebi-IDmetaboliteproduction
6836815688acetoinyes
6836835581indoleno
6836816136hydrogen sulfideno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
6836815688acetoin+
6836835581indole-

enzymes

@refvalueactivityec
68368cytochrome oxidase-1.9.3.1
68368gelatinase-
68368tryptophan deaminase-4.1.99.1
68368urease-3.5.1.5
68368ornithine decarboxylase-4.1.1.17
68368lysine decarboxylase-4.1.1.18
68368arginine dihydrolase-3.5.3.6
68368beta-galactosidase-3.2.1.23

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGELGLUMANINOSorRHASACMELAMYARAOX
12729---------+-++++-+--+-

Isolation, sampling and environmental information

isolation

  • @ref: 12729
  • sample type: blighted apple twig (Malus pumila)
  • host species: Malus pumila
  • country: USA
  • origin.country: USA
  • continent: North America

isolation source categories

Cat1Cat2Cat3
#Host#Plants#Tree
#Host Body-Site#Plant#Stem (Branch)

taxonmaps

  • @ref: 69479
  • File name: preview.99_717.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_6;96_7;97_502;98_576;99_717&stattab=map
  • Last taxonomy: Erwinia
  • 16S sequence: AF140339
  • Sequence Identity:
  • Total samples: 2160
  • soil counts: 90
  • aquatic counts: 255
  • animal counts: 1537
  • plant counts: 278

Safety information

risk assessment

  • @ref: 12729
  • pathogenicity plant: yes
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 20218
  • description: Erwinia amylovora strain BC224 16S ribosomal RNA gene, partial sequence
  • accession: AF140339
  • length: 1480
  • database: ena
  • NCBI tax ID: 552

External links

@ref: 12729

culture collection no.: DSM 50901, ATCC 15357, ICPB EA137, PDDCC 1392

straininfo link

  • @ref: 73878
  • straininfo: 36349

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
12729Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 50901)https://www.dsmz.de/collection/catalogue/details/culture/DSM-50901
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
68368Automatically annotated from API 20E
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
73878Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID36349.1StrainInfo: A central database for resolving microbial strain identifiers