Strain identifier
BacDive ID: 4387
Type strain:
Species: Erwinia amylovora
Strain history: <- ICPB <- P.A. Ark
NCBI tax ID(s): 552 (species)
General
@ref: 12729
BacDive-ID: 4387
DSM-Number: 50901
keywords: 16S sequence, Bacteria, mesophilic, plant pathogen
description: Erwinia amylovora DSM 50901 is a mesophilic plant pathogen that was isolated from blighted apple twig .
NCBI tax id
- NCBI tax id: 552
- Matching level: species
strain history
- @ref: 12729
- history: <- ICPB <- P.A. Ark
doi: 10.13145/bacdive4387.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Enterobacterales
- family: Erwiniaceae
- genus: Erwinia
- species: Erwinia amylovora
- full scientific name: Erwinia amylovora (Burrill 1882) Winslow et al. 1920 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Micrococcus amylovorus
@ref: 12729
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Enterobacteriales, not validated
family: Erwiniaceae
genus: Erwinia
species: Erwinia amylovora
full scientific name: Erwinia amylovora (Burrill 1882) Winslow et al. 1920 emend. Hauben et al. 1998
type strain: no
Culture and growth conditions
culture medium
- @ref: 12729
- name: NUTRIENT AGAR (DSMZ Medium 1)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1
- composition: Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
culture temp
- @ref: 12729
- growth: positive
- type: growth
- temperature: 26
- range: mesophilic
Physiology and metabolism
compound production
- @ref: 12729
- compound: pyruvate carboxylase
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
68368 | 30849 | L-arabinose | + | fermentation |
68368 | 27613 | amygdalin | - | fermentation |
68368 | 28053 | melibiose | - | fermentation |
68368 | 17992 | sucrose | + | fermentation |
68368 | 62345 | L-rhamnose | - | fermentation |
68368 | 30911 | sorbitol | + | fermentation |
68368 | 17268 | myo-inositol | + | fermentation |
68368 | 16899 | D-mannitol | + | fermentation |
68368 | 17634 | D-glucose | + | fermentation |
68368 | 5291 | gelatin | - | hydrolysis |
68368 | 27897 | tryptophan | - | energy source |
68368 | 16199 | urea | - | hydrolysis |
68368 | 16947 | citrate | - | assimilation |
68368 | 18257 | ornithine | - | degradation |
68368 | 25094 | lysine | - | degradation |
68368 | 29016 | arginine | - | hydrolysis |
metabolite production
@ref | Chebi-ID | metabolite | production |
---|---|---|---|
68368 | 15688 | acetoin | yes |
68368 | 35581 | indole | no |
68368 | 16136 | hydrogen sulfide | no |
metabolite tests
@ref | Chebi-ID | metabolite | voges-proskauer-test | indole test |
---|---|---|---|---|
68368 | 15688 | acetoin | + | |
68368 | 35581 | indole | - |
enzymes
@ref | value | activity | ec |
---|---|---|---|
68368 | cytochrome oxidase | - | 1.9.3.1 |
68368 | gelatinase | - | |
68368 | tryptophan deaminase | - | 4.1.99.1 |
68368 | urease | - | 3.5.1.5 |
68368 | ornithine decarboxylase | - | 4.1.1.17 |
68368 | lysine decarboxylase | - | 4.1.1.18 |
68368 | arginine dihydrolase | - | 3.5.3.6 |
68368 | beta-galactosidase | - | 3.2.1.23 |
API 20E
@ref | ONPG | ADH Arg | LDC Lys | ODC | CIT | H2S | URE | TDA Trp | IND | VP | GEL | GLU | MAN | INO | Sor | RHA | SAC | MEL | AMY | ARA | OX |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
12729 | - | - | - | - | - | - | - | - | - | + | - | + | + | + | + | - | + | - | - | + | - |
Isolation, sampling and environmental information
isolation
- @ref: 12729
- sample type: blighted apple twig (Malus pumila)
- host species: Malus pumila
- country: USA
- origin.country: USA
- continent: North America
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Host | #Plants | #Tree |
#Host Body-Site | #Plant | #Stem (Branch) |
taxonmaps
- @ref: 69479
- File name: preview.99_717.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_6;96_7;97_502;98_576;99_717&stattab=map
- Last taxonomy: Erwinia
- 16S sequence: AF140339
- Sequence Identity:
- Total samples: 2160
- soil counts: 90
- aquatic counts: 255
- animal counts: 1537
- plant counts: 278
Safety information
risk assessment
- @ref: 12729
- pathogenicity plant: yes
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 20218
- description: Erwinia amylovora strain BC224 16S ribosomal RNA gene, partial sequence
- accession: AF140339
- length: 1480
- database: ena
- NCBI tax ID: 552
External links
@ref: 12729
culture collection no.: DSM 50901, ATCC 15357, ICPB EA137, PDDCC 1392
straininfo link
- @ref: 73878
- straininfo: 36349
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
12729 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 50901) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-50901 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
68368 | Automatically annotated from API 20E | |||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
73878 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID36349.1 | StrainInfo: A central database for resolving microbial strain identifiers |