Strain identifier

BacDive ID: 4384

Type strain: Yes

Species: Enterobacter mori

Strain Designation: R18-2

Strain history: <- LMG <- Zhejiang Univ., Hangzhou, China

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 18181

BacDive-ID: 4384

DSM-Number: 26271

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, spore-forming, mesophilic, Gram-variable, rod-shaped, plant pathogen

description: Enterobacter mori R18-2 is an anaerobe, spore-forming, mesophilic plant pathogen that was isolated from roots of diseased white mulberry plant Morus alba L..

NCBI tax id

NCBI tax idMatching level
539813species
980518strain

strain history

  • @ref: 18181
  • history: <- LMG <- Zhejiang Univ., Hangzhou, China

doi: 10.13145/bacdive4384.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Enterobacteriaceae
  • genus: Enterobacter
  • species: Enterobacter mori
  • full scientific name: Enterobacter mori Zhu et al. 2011
  • synonyms

    • @ref: 20215
    • synonym: Enterobacter tabaci

@ref: 18181

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacteriales, not validated

family: Enterobacteriaceae

genus: Enterobacter

species: Enterobacter mori

full scientific name: Enterobacter mori Zhu et al. 2011

strain designation: R18-2

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityconfidence
31037variable2.5 µm0.8 µmrod-shaped
69480yes97.339
69480negative99.992

multimedia

  • @ref: 18181
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_26271.jpg
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

  • @ref: 18181
  • name: NUTRIENT AGAR (DSMZ Medium 1)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/1
  • composition: Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
18181positivegrowth28mesophilic
31037positivegrowth50-70thermophilic
31037positiveoptimum65thermophilic

culture pH

@refabilitytypepH
31037positivegrowth5.7-8.0
31037positiveoptimum7.5

Physiology and metabolism

oxygen tolerance

  • @ref: 31037
  • oxygen tolerance: anaerobe

spore formation

@refspore formationconfidence
31037yes
69481yes98
69480no99.932

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3103728757fructose+carbon source
3103728260galactose+carbon source
3103717234glucose+carbon source
3103737684mannose+carbon source
3103715361pyruvate+carbon source
3103716634raffinose+carbon source
3103733942ribose+carbon source
3103717992sucrose+carbon source
3103718222xylose+carbon source
6836830849L-arabinose+fermentation
6836827613amygdalin+fermentation
6836828053melibiose+fermentation
6836817992sucrose+fermentation
6836862345L-rhamnose+fermentation
6836830911sorbitol+fermentation
6836817268myo-inositol+fermentation
6836816899D-mannitol+fermentation
6836817634D-glucose+fermentation
683685291gelatin-hydrolysis
6836827897tryptophan-energy source
6836816199urea-hydrolysis
6836816947citrate+assimilation
6836818257ornithine+degradation
6836825094lysine-degradation
6836829016arginine+hydrolysis

metabolite production

@refChebi-IDmetaboliteproduction
6836815688acetoinyes
6836835581indoleno
6836816136hydrogen sulfideno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
6836815688acetoin+
6836835581indole-

enzymes

@refvalueactivityec
68368cytochrome oxidase-1.9.3.1
68368gelatinase-
68368tryptophan deaminase-4.1.99.1
68368urease-3.5.1.5
68368ornithine decarboxylase+4.1.1.17
68368lysine decarboxylase-4.1.1.18
68368arginine dihydrolase+3.5.3.6
68368beta-galactosidase+3.2.1.23

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGELGLUMANINOSorRHASACMELAMYARAOX
18181++-++----+-+++++++++-

Isolation, sampling and environmental information

isolation

  • @ref: 18181
  • sample type: roots of diseased white mulberry plant Morus alba L.
  • host species: Morus alba
  • geographic location: Zhejiang province, Hangzhou, Tonglu
  • country: China
  • origin.country: CHN
  • continent: Asia

isolation source categories

Cat1Cat2Cat3
#Infection
#Host#Plants#Tree
#Host Body-Site#Plant#Root (Rhizome)

taxonmaps

  • @ref: 69479
  • File name: preview.99_66.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_6;96_7;97_7;98_17;99_66&stattab=map
  • Last taxonomy: Enterobacterales
  • 16S sequence: EU721605
  • Sequence Identity:
  • Total samples: 14221
  • soil counts: 575
  • aquatic counts: 888
  • animal counts: 11838
  • plant counts: 920

Safety information

risk assessment

  • @ref: 18181
  • pathogenicity plant: yes
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 18181
  • description: Enterobacter mori strain R18-2 16S ribosomal RNA gene, partial sequence
  • accession: EU721605
  • length: 1285
  • database: ena
  • NCBI tax ID: 980518

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Enterobacter mori LMG 25706GCA_000211415scaffoldncbi980518
66792Enterobacter mori LMG 25706980518.3wgspatric980518
66792Enterobacter mori LMG 257062547132296draftimg980518

GC content

  • @ref: 31037
  • GC-content: 54.6

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes98no
motileyes87.691no
flagellatedno60.683no
gram-positiveno98.116yes
anaerobicno94.746yes
aerobicyes73.414yes
halophileno85.422no
spore-formingno90.746yes
thermophileno99.744no
glucose-utilyes94.643yes
glucose-fermentyes92.847yes

External links

@ref: 18181

culture collection no.: DSM 26271, CGMCC 1.10322, LMG 25706

straininfo link

  • @ref: 73875
  • straininfo: 369642

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny21216919Enterobacter mori sp. nov., associated with bacterial wilt on Morus alba L.Zhu B, Lou MM, Xie GL, Wang GF, Zhou Q, Wang F, Fang Y, Su T, Li B, Duan YPInt J Syst Evol Microbiol10.1099/ijs.0.028613-02011Base Composition, Enterobacter/*classification/genetics/*isolation & purification/physiology, Fatty Acids/metabolism, Molecular Sequence Data, Morus/*microbiology, Phylogeny, Plant Diseases/*microbiology, Plant Roots/microbiologyGenetics
Genetics21602328Genome sequence of the Enterobacter mori type strain, LMG 25706, a pathogenic bacterium of Morus alba L.Zhu B, Zhang GQ, Lou MM, Tian WX, Li B, Zhou XP, Wang GF, Liu H, Xie GL, Jin GLJ Bacteriol10.1128/JB.05200-112011Base Sequence, Enterobacter/classification/*genetics/isolation & purification, *Genome, Bacterial, Molecular Sequence Data, Morus/*microbiology, Plant Diseases/*microbiology, Sequence Analysis, DNAPhylogeny
Phylogeny24824638Enterobacter xiangfangensis sp. nov., isolated from Chinese traditional sourdough, and reclassification of Enterobacter sacchari Zhu et al. 2013 as Kosakonia sacchari comb. nov.Gu CT, Li CY, Yang LJ, Huo GCInt J Syst Evol Microbiol10.1099/ijs.0.064709-02014Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Enterobacter/*classification/genetics/isolation & purification, Fatty Acids/chemistry, Fermentation, *Food Microbiology, Genes, Bacterial, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNABiotechnology
Phylogeny26346479Enterobacter tabaci sp. nov., a novel member of the genus Enterobacter isolated from a tobacco stem.Duan YQ, Zhou XK, Di-Yan L, Li QQ, Dang LZ, Zhang YG, Qiu LH, Nimaichand S, Li WJAntonie Van Leeuwenhoek10.1007/s10482-015-0569-12015Enterobacter/chemistry/*classification/genetics/isolation & purification, Fatty Acids/chemistry, Phylogeny, Plant Stems/*microbiology, RNA, Ribosomal, 16S/genetics, Tobacco/*microbiologyEnzymology
36366829First Report of Bacterial Wilt Caused by Enterobacter mori of Strawberry in Beijing, China.Ji S, Li H, Zhou Y, Li X, Yan J, Zhang WPlant Dis10.1094/PDIS-08-22-1895-PDN2022

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
18181Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 26271)https://www.dsmz.de/collection/catalogue/details/culture/DSM-26271
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
31037Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2736728776041
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68368Automatically annotated from API 20E
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
73875Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID369642.1StrainInfo: A central database for resolving microbial strain identifiers