Strain identifier
BacDive ID: 4384
Type strain:
Species: Enterobacter mori
Strain Designation: R18-2
Strain history: <- LMG <- Zhejiang Univ., Hangzhou, China
NCBI tax ID(s): 980518 (strain), 539813 (species)
General
@ref: 18181
BacDive-ID: 4384
DSM-Number: 26271
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, spore-forming, mesophilic, Gram-variable, rod-shaped, plant pathogen
description: Enterobacter mori R18-2 is an anaerobe, spore-forming, mesophilic plant pathogen that was isolated from roots of diseased white mulberry plant Morus alba L..
NCBI tax id
NCBI tax id | Matching level |
---|---|
539813 | species |
980518 | strain |
strain history
- @ref: 18181
- history: <- LMG <- Zhejiang Univ., Hangzhou, China
doi: 10.13145/bacdive4384.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Enterobacterales
- family: Enterobacteriaceae
- genus: Enterobacter
- species: Enterobacter mori
- full scientific name: Enterobacter mori Zhu et al. 2011
synonyms
- @ref: 20215
- synonym: Enterobacter tabaci
@ref: 18181
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Enterobacteriales, not validated
family: Enterobacteriaceae
genus: Enterobacter
species: Enterobacter mori
full scientific name: Enterobacter mori Zhu et al. 2011
strain designation: R18-2
type strain: yes
Morphology
cell morphology
@ref | gram stain | cell length | cell width | cell shape | motility | confidence |
---|---|---|---|---|---|---|
31037 | variable | 2.5 µm | 0.8 µm | rod-shaped | ||
69480 | yes | 97.339 | ||||
69480 | negative | 99.992 |
multimedia
- @ref: 18181
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_26271.jpg
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
- @ref: 18181
- name: NUTRIENT AGAR (DSMZ Medium 1)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1
- composition: Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
18181 | positive | growth | 28 | mesophilic |
31037 | positive | growth | 50-70 | thermophilic |
31037 | positive | optimum | 65 | thermophilic |
culture pH
@ref | ability | type | pH |
---|---|---|---|
31037 | positive | growth | 5.7-8.0 |
31037 | positive | optimum | 7.5 |
Physiology and metabolism
oxygen tolerance
- @ref: 31037
- oxygen tolerance: anaerobe
spore formation
@ref | spore formation | confidence |
---|---|---|
31037 | yes | |
69481 | yes | 98 |
69480 | no | 99.932 |
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
31037 | 28757 | fructose | + | carbon source |
31037 | 28260 | galactose | + | carbon source |
31037 | 17234 | glucose | + | carbon source |
31037 | 37684 | mannose | + | carbon source |
31037 | 15361 | pyruvate | + | carbon source |
31037 | 16634 | raffinose | + | carbon source |
31037 | 33942 | ribose | + | carbon source |
31037 | 17992 | sucrose | + | carbon source |
31037 | 18222 | xylose | + | carbon source |
68368 | 30849 | L-arabinose | + | fermentation |
68368 | 27613 | amygdalin | + | fermentation |
68368 | 28053 | melibiose | + | fermentation |
68368 | 17992 | sucrose | + | fermentation |
68368 | 62345 | L-rhamnose | + | fermentation |
68368 | 30911 | sorbitol | + | fermentation |
68368 | 17268 | myo-inositol | + | fermentation |
68368 | 16899 | D-mannitol | + | fermentation |
68368 | 17634 | D-glucose | + | fermentation |
68368 | 5291 | gelatin | - | hydrolysis |
68368 | 27897 | tryptophan | - | energy source |
68368 | 16199 | urea | - | hydrolysis |
68368 | 16947 | citrate | + | assimilation |
68368 | 18257 | ornithine | + | degradation |
68368 | 25094 | lysine | - | degradation |
68368 | 29016 | arginine | + | hydrolysis |
metabolite production
@ref | Chebi-ID | metabolite | production |
---|---|---|---|
68368 | 15688 | acetoin | yes |
68368 | 35581 | indole | no |
68368 | 16136 | hydrogen sulfide | no |
metabolite tests
@ref | Chebi-ID | metabolite | voges-proskauer-test | indole test |
---|---|---|---|---|
68368 | 15688 | acetoin | + | |
68368 | 35581 | indole | - |
enzymes
@ref | value | activity | ec |
---|---|---|---|
68368 | cytochrome oxidase | - | 1.9.3.1 |
68368 | gelatinase | - | |
68368 | tryptophan deaminase | - | 4.1.99.1 |
68368 | urease | - | 3.5.1.5 |
68368 | ornithine decarboxylase | + | 4.1.1.17 |
68368 | lysine decarboxylase | - | 4.1.1.18 |
68368 | arginine dihydrolase | + | 3.5.3.6 |
68368 | beta-galactosidase | + | 3.2.1.23 |
API 20E
@ref | ONPG | ADH Arg | LDC Lys | ODC | CIT | H2S | URE | TDA Trp | IND | VP | GEL | GLU | MAN | INO | Sor | RHA | SAC | MEL | AMY | ARA | OX |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
18181 | + | + | - | + | + | - | - | - | - | + | - | + | + | + | + | + | + | + | + | + | - |
Isolation, sampling and environmental information
isolation
- @ref: 18181
- sample type: roots of diseased white mulberry plant Morus alba L.
- host species: Morus alba
- geographic location: Zhejiang province, Hangzhou, Tonglu
- country: China
- origin.country: CHN
- continent: Asia
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Infection | ||
#Host | #Plants | #Tree |
#Host Body-Site | #Plant | #Root (Rhizome) |
taxonmaps
- @ref: 69479
- File name: preview.99_66.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_6;96_7;97_7;98_17;99_66&stattab=map
- Last taxonomy: Enterobacterales
- 16S sequence: EU721605
- Sequence Identity:
- Total samples: 14221
- soil counts: 575
- aquatic counts: 888
- animal counts: 11838
- plant counts: 920
Safety information
risk assessment
- @ref: 18181
- pathogenicity plant: yes
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 18181
- description: Enterobacter mori strain R18-2 16S ribosomal RNA gene, partial sequence
- accession: EU721605
- length: 1285
- database: ena
- NCBI tax ID: 980518
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Enterobacter mori LMG 25706 | GCA_000211415 | scaffold | ncbi | 980518 |
66792 | Enterobacter mori LMG 25706 | 980518.3 | wgs | patric | 980518 |
66792 | Enterobacter mori LMG 25706 | 2547132296 | draft | img | 980518 |
GC content
- @ref: 31037
- GC-content: 54.6
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | yes | 98 | no |
motile | yes | 87.691 | no |
flagellated | no | 60.683 | no |
gram-positive | no | 98.116 | yes |
anaerobic | no | 94.746 | yes |
aerobic | yes | 73.414 | yes |
halophile | no | 85.422 | no |
spore-forming | no | 90.746 | yes |
thermophile | no | 99.744 | no |
glucose-util | yes | 94.643 | yes |
glucose-ferment | yes | 92.847 | yes |
External links
@ref: 18181
culture collection no.: DSM 26271, CGMCC 1.10322, LMG 25706
straininfo link
- @ref: 73875
- straininfo: 369642
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 21216919 | Enterobacter mori sp. nov., associated with bacterial wilt on Morus alba L. | Zhu B, Lou MM, Xie GL, Wang GF, Zhou Q, Wang F, Fang Y, Su T, Li B, Duan YP | Int J Syst Evol Microbiol | 10.1099/ijs.0.028613-0 | 2011 | Base Composition, Enterobacter/*classification/genetics/*isolation & purification/physiology, Fatty Acids/metabolism, Molecular Sequence Data, Morus/*microbiology, Phylogeny, Plant Diseases/*microbiology, Plant Roots/microbiology | Genetics |
Genetics | 21602328 | Genome sequence of the Enterobacter mori type strain, LMG 25706, a pathogenic bacterium of Morus alba L. | Zhu B, Zhang GQ, Lou MM, Tian WX, Li B, Zhou XP, Wang GF, Liu H, Xie GL, Jin GL | J Bacteriol | 10.1128/JB.05200-11 | 2011 | Base Sequence, Enterobacter/classification/*genetics/isolation & purification, *Genome, Bacterial, Molecular Sequence Data, Morus/*microbiology, Plant Diseases/*microbiology, Sequence Analysis, DNA | Phylogeny |
Phylogeny | 24824638 | Enterobacter xiangfangensis sp. nov., isolated from Chinese traditional sourdough, and reclassification of Enterobacter sacchari Zhu et al. 2013 as Kosakonia sacchari comb. nov. | Gu CT, Li CY, Yang LJ, Huo GC | Int J Syst Evol Microbiol | 10.1099/ijs.0.064709-0 | 2014 | Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Enterobacter/*classification/genetics/isolation & purification, Fatty Acids/chemistry, Fermentation, *Food Microbiology, Genes, Bacterial, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA | Biotechnology |
Phylogeny | 26346479 | Enterobacter tabaci sp. nov., a novel member of the genus Enterobacter isolated from a tobacco stem. | Duan YQ, Zhou XK, Di-Yan L, Li QQ, Dang LZ, Zhang YG, Qiu LH, Nimaichand S, Li WJ | Antonie Van Leeuwenhoek | 10.1007/s10482-015-0569-1 | 2015 | Enterobacter/chemistry/*classification/genetics/isolation & purification, Fatty Acids/chemistry, Phylogeny, Plant Stems/*microbiology, RNA, Ribosomal, 16S/genetics, Tobacco/*microbiology | Enzymology |
36366829 | First Report of Bacterial Wilt Caused by Enterobacter mori of Strawberry in Beijing, China. | Ji S, Li H, Zhou Y, Li X, Yan J, Zhang W | Plant Dis | 10.1094/PDIS-08-22-1895-PDN | 2022 |
Reference
@id | authors | catalogue | doi/url | title | ID_cross_reference | pubmed |
---|---|---|---|---|---|---|
18181 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 26271) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-26271 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
31037 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 27367 | 28776041 | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
68368 | Automatically annotated from API 20E | |||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
73875 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID369642.1 | StrainInfo: A central database for resolving microbial strain identifiers |