Strain identifier

BacDive ID: 4382

Type strain: No

Species: Franconibacter pulveris

Strain Designation: 1160/04, E908

Strain history: <- R. Stephan, Institute for Food Safety and Hygiene, Zurich

NCBI tax ID(s): 435910 (species)

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General

@ref: 7843

BacDive-ID: 4382

DSM-Number: 19146

keywords: 16S sequence, Bacteria, mesophilic

description: Franconibacter pulveris 1160/04 is a mesophilic bacterium that was isolated from Fruit powder.

NCBI tax id

  • NCBI tax id: 435910
  • Matching level: species

strain history

  • @ref: 7843
  • history: <- R. Stephan, Institute for Food Safety and Hygiene, Zurich

doi: 10.13145/bacdive4382.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Enterobacteriaceae
  • genus: Franconibacter
  • species: Franconibacter pulveris
  • full scientific name: Franconibacter pulveris (Stephan et al. 2008) Stephan et al. 2014

  • synonyms

    @refsynonym
    20215Enterobacter pulveris
    20215Cronobacter pulveris

@ref: 7843

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacteriales, not validated

family: Enterobacteriaceae

genus: Franconibacter

species: Franconibacter pulveris

full scientific name: Franconibacter pulveris (Stephan et al. 2008) Stephan et al. 2014

strain designation: 1160/04, E908

type strain: no

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
7843COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
7843TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)yeshttps://mediadive.dsmz.de/medium/535Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
7843NUTRIENT AGAR (DSMZ Medium 1)yeshttps://mediadive.dsmz.de/medium/1Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water

culture temp

  • @ref: 7843
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836830849L-arabinose+fermentation
6836827613amygdalin+fermentation
6836828053melibiose+fermentation
6836817992sucrose+fermentation
6836862345L-rhamnose+fermentation
6836830911sorbitol-fermentation
6836817268myo-inositol-fermentation
6836816899D-mannitol+fermentation
6836817634D-glucose+fermentation
683685291gelatin+hydrolysis
6836827897tryptophan-energy source
6836816199urea-hydrolysis
6836816947citrate+assimilation
6836818257ornithine-degradation
6836825094lysine-degradation
6836829016arginine-hydrolysis

metabolite production

@refChebi-IDmetaboliteproduction
6836815688acetoinyes
6836835581indoleno
6836816136hydrogen sulfideno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
6836815688acetoin+
6836835581indole-

enzymes

@refvalueactivityec
68368gelatinase+
68368tryptophan deaminase-4.1.99.1
68368urease-3.5.1.5
68368ornithine decarboxylase-4.1.1.17
68368lysine decarboxylase-4.1.1.18
68368arginine dihydrolase-3.5.3.6
68368beta-galactosidase+3.2.1.23

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGELGLUMANINOSorRHASACMELAMYARAOX
7843+---+----++++--++++++/-

Isolation, sampling and environmental information

isolation

  • @ref: 7843
  • sample type: Fruit powder
  • geographic location: Zurich
  • country: Switzerland
  • origin.country: CHE
  • continent: Europe

isolation source categories

  • Cat1: #Host Body-Site
  • Cat2: #Plant
  • Cat3: #Fruit (Seed)

Safety information

risk assessment

  • @ref: 7843
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 7843
  • description: Enterobacter pulveris strain 1160/04 16S ribosomal RNA gene, partial sequence
  • accession: DQ273686
  • length: 1220
  • database: ena
  • NCBI tax ID: 435910

GC content

  • @ref: 7843
  • GC-content: 56.5
  • method: sequence analysis

External links

@ref: 7843

culture collection no.: DSM 19146

straininfo link

  • @ref: 73873
  • straininfo: 361638

literature

  • topic: Genetics
  • Pubmed-ID: 24309737
  • title: Genome Sequences of Two Enterobacter pulveris Strains, 601/05T (=LMG 24057T =DSM 19144T) and 1160/04 (=LMG 24058 =DSM 19146), Isolated from Fruit Powder.
  • authors: Gopinath GR, Grim CJ, Tall BD, Mammel MK, Sathyamoorthy V, Trach LH, Chase HR, Fanning S, Stephan R
  • journal: Genome Announc
  • DOI: 10.1128/genomeA.00991-13
  • year: 2013
  • topic2: Phylogeny

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
7843Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19146)https://www.dsmz.de/collection/catalogue/details/culture/DSM-19146
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
68368Automatically annotated from API 20E
73873Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID361638.1StrainInfo: A central database for resolving microbial strain identifiers