Strain identifier

BacDive ID: 4380

Type strain: Yes

Species: Franconibacter pulveris

Strain Designation: 601/05

Strain history: CIP <- 2014, DSMZ <- R. Stephan, Inst. Food Safety Hyg., Zurich, Switzerland: strain 601/05

NCBI tax ID(s): 1121863 (strain), 435910 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 8.1 (current version)

General

@ref: 7841

BacDive-ID: 4380

DSM-Number: 19144

keywords: genome sequence, 16S sequence, Bacteria, facultative anaerobe, mesophilic, Gram-negative, motile, rod-shaped

description: Franconibacter pulveris 601/05 is a facultative anaerobe, mesophilic, Gram-negative bacterium that was isolated from Fruit powder.

NCBI tax id

NCBI tax idMatching level
1121863strain
435910species

strain history

@refhistory
7841<- R. Stephan, Institute for Food Safety and Hygiene, Zurich
67770LMG 24057 <-- R. Stephan 601/05.
122051CIP <- 2014, DSMZ <- R. Stephan, Inst. Food Safety Hyg., Zurich, Switzerland: strain 601/05

doi: 10.13145/bacdive4380.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Enterobacteriaceae
  • genus: Franconibacter
  • species: Franconibacter pulveris
  • full scientific name: Franconibacter pulveris (Stephan et al. 2008) Stephan et al. 2014

  • synonyms

    @refsynonym
    20215Enterobacter pulveris
    20215Cronobacter pulveris

@ref: 7841

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacteriales, not validated

family: Enterobacteriaceae

genus: Franconibacter

species: Franconibacter pulveris

full scientific name: Franconibacter pulveris (Stephan et al. 2008) Stephan et al. 2014

strain designation: 601/05

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityconfidence
32394negative2.25 µm0.95 µmrod-shapedyes
69480yes97.729
69480negative99.976
122051negativerod-shapedyes

pigmentation

  • @ref: 32394
  • production: yes

multimedia

  • @ref: 7841
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_19144.jpg
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
7841COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
7841TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)yeshttps://mediadive.dsmz.de/medium/535Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
7841NUTRIENT AGAR (DSMZ Medium 1)yeshttps://mediadive.dsmz.de/medium/1Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
122051CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
7841positivegrowth37mesophilic
32394positivegrowth10-44
67770positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 32394
  • oxygen tolerance: facultative anaerobe

spore formation

@refspore formationconfidence
69481no100
69480no99.322

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
32394168082-dehydro-D-gluconate+carbon source
32394581435-dehydro-D-gluconate+carbon source
3239416449alanine+carbon source
3239422599arabinose+carbon source
3239418403L-arabitol+carbon source
3239435391aspartate+carbon source
3239417057cellobiose+carbon source
3239428757fructose+carbon source
3239428260galactose+carbon source
3239424175galacturonate+carbon source
3239424265gluconate+carbon source
323945417glucosamine+carbon source
3239417234glucose+carbon source
3239429987glutamate+carbon source
3239417754glycerol+carbon source
3239424996lactate+carbon source
3239417716lactose+carbon source
3239425115malate+carbon source
3239417306maltose+carbon source
3239429864mannitol+carbon source
3239437684mannose+carbon source
3239428053melibiose+carbon source
32394506227N-acetylglucosamine+carbon source
3239426271proline+carbon source
3239426490quinate+carbon source
3239416634raffinose+carbon source
3239426546rhamnose+carbon source
3239433942ribose+carbon source
3239417822serine+carbon source
3239417992sucrose+carbon source
3239427082trehalose+carbon source
3239418222xylose+carbon source
6836830849L-arabinose+fermentation
6836827613amygdalin+fermentation
6836828053melibiose+fermentation
6836817992sucrose+fermentation
6836862345L-rhamnose+fermentation
6836830911sorbitol-fermentation
6836817268myo-inositol-fermentation
6836816899D-mannitol+fermentation
6836817634D-glucose+fermentation
6836827897tryptophan-energy source
6836816199urea-hydrolysis
6836816947citrate-assimilation
6836818257ornithine-degradation
6836825094lysine-degradation
6836829016arginine-hydrolysis

metabolite production

@refChebi-IDmetaboliteproduction
6836815688acetoinno
6836835581indoleno
6836816136hydrogen sulfideno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
6836815688acetoin-
6836835581indole-

enzymes

@refvalueactivityec
32394catalase+1.11.1.6
32394cytochrome oxidase+1.9.3.1
68368cytochrome oxidase-1.9.3.1
68368tryptophan deaminase-4.1.99.1
68368urease-3.5.1.5
68368ornithine decarboxylase-4.1.1.17
68368lysine decarboxylase-4.1.1.18
68368arginine dihydrolase-3.5.3.6
68368beta-galactosidase+3.2.1.23

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGELGLUMANINOSorRHASACMELAMYARAOX
7841+---------+++--+++++-
7841+----------++--+++++-

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
7841Fruit powderZurichSwitzerlandCHEEurope
67770Fruit powder
122051Fruit powderZurichSwitzerlandCHEEurope

isolation source categories

  • Cat1: #Host Body-Site
  • Cat2: #Plant
  • Cat3: #Fruit (Seed)

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
78411Risk group (German classification)
1220511Risk group (French classification)

Sequence information

16S sequences

  • @ref: 7841
  • description: Enterobacter pulveris strain 601/05 16S ribosomal RNA gene, partial sequence
  • accession: DQ273684
  • length: 1325
  • database: ena
  • NCBI tax ID: 435910

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Enterobacter pulveris DSM 191441121863.3wgspatric1121863
66792Franconibacter pulveris DSM 191442556921006draftimg1121863
67770Franconibacter pulveris DSM 19144GCA_000621185scaffoldncbi1121863

GC content

@refGC-contentmethod
3239457
784156.6sequence analysis
6777057high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileyes90.738no
flagellatedno74.441no
gram-positiveno98.06yes
anaerobicno97.058no
halophileno87.296no
spore-formingno93.249no
thermophileno99.335yes
glucose-utilyes96.505yes
aerobicyes68.672no
glucose-fermentyes92.098yes

External links

@ref: 7841

culture collection no.: DSM 19144, LMG 24057, JCM 16471, CIP 110811

straininfo link

  • @ref: 73871
  • straininfo: 323964

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny18175715Enterobacter pulveris sp. nov., isolated from fruit powder, infant formula and an infant formula production environment.Stephan R, Van Trappen S, Cleenwerck I, Iversen C, Joosten H, De Vos P, Lehner AInt J Syst Evol Microbiol10.1099/ijs.0.65427-02008Bacterial Typing Techniques, DNA, Bacterial/analysis, DNA-Directed RNA Polymerases/genetics, Enterobacter/*classification/genetics/isolation & purification/metabolism, *Environmental Microbiology, *Food Industry, Fruit/*microbiology, Genes, rRNA, Infant Food/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Species SpecificityGenetics
Genetics24309737Genome Sequences of Two Enterobacter pulveris Strains, 601/05T (=LMG 24057T =DSM 19144T) and 1160/04 (=LMG 24058 =DSM 19146), Isolated from Fruit Powder.Gopinath GR, Grim CJ, Tall BD, Mammel MK, Sathyamoorthy V, Trach LH, Chase HR, Fanning S, Stephan RGenome Announc10.1128/genomeA.00991-132013Phylogeny
Phylogeny25028159Re-examination of the taxonomic status of Enterobacter helveticus, Enterobacter pulveris and Enterobacter turicensis as members of the genus Cronobacter and their reclassification in the genera Franconibacter gen. nov. and Siccibacter gen. nov. as Franconibacter helveticus comb. nov., Franconibacter pulveris comb. nov. and Siccibacter turicensis comb. nov., respectively.Stephan R, Grim CJ, Gopinath GR, Mammel MK, Sathyamoorthy V, Trach LH, Chase HR, Fanning S, Tall BDInt J Syst Evol Microbiol10.1099/ijs.0.059832-02014Bacterial Typing Techniques, Cronobacter/*classification/genetics, DNA, Bacterial/genetics, Enterobacter/*classification/genetics, Enterobacteriaceae/*classification/genetics, Genes, Bacterial, Molecular Sequence Data, Multilocus Sequence Typing, Nucleic Acid Hybridization, *Phylogeny, Polymorphism, Single Nucleotide, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNAGenetics
Enzymology27493642Detection of Cronobacter Genus in Powdered Infant Formula by Enzyme-linked Immunosorbent Assay Using Anti-Cronobacter Antibody.Song X, Shukla S, Lee G, Park S, Kim MFront Microbiol10.3389/fmicb.2016.011242016
Phylogeny29034856Franconibacter daqui sp. nov., a facultatively alkaliphilic species isolated from a Daqu sample.Gao Z, Su C, Yang X, Sun D, Zeng C, Chen M, Hu W, Zhang CInt J Syst Evol Microbiol10.1099/ijsem.0.0023582017Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Enterobacteriaceae/*classification/genetics/isolation & purification, Fatty Acids/chemistry, Fermented Foods/*microbiology, *Food Microbiology, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Ubiquinone/chemistry, Vitamin K 2/analogs & derivatives/chemistryBiotechnology

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmedjournal
7841Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19144)https://www.dsmz.de/collection/catalogue/details/culture/DSM-19144
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
32394Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2861828776041
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updates33211880Nucleic Acids Res. 49: D498-D508 2020
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68368Automatically annotated from API 20E
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
73871Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID323964.1StrainInfo: A central database for resolving microbial strain identifiers
122051Curators of the CIPCollection of Institut Pasteur (CIP 110811)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20110811