Strain identifier

BacDive ID: 4373

Type strain: Yes

Species: Enterobacter cloacae

Strain history: CIP <- 1960, NCTC, Enterobacter cloacae <- P.R. Edwards, CDC: strain 279-56, Aerobacter cloacae (Cloaca A)

NCBI tax ID(s): 716541 (strain), 550 (species)

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General

@ref: 9103

BacDive-ID: 4373

DSM-Number: 30054

keywords: genome sequence, 16S sequence, Bacteria, facultative anaerobe, mesophilic, Gram-negative, motile, rod-shaped, antibiotic resistance, human pathogen

description: Enterobacter cloacae DSM 30054 is a facultative anaerobe, mesophilic, Gram-negative human pathogen that has multiple antibiotic resistances and was isolated from spinal fluid.

NCBI tax id

NCBI tax idMatching level
716541strain
550species

strain history

@refhistory
9103<- ATCC; ATCC 13047 <- NCDC; NCDC 279-56
67770R. Sakazaki 206 <-- ATCC 13047 <-- NCDC 279-56 ("Aerobacter cloacae" Cloaca A).
118316CIP <- 1960, NCTC, Enterobacter cloacae <- P.R. Edwards, CDC: strain 279-56, Aerobacter cloacae (Cloaca A)

doi: 10.13145/bacdive4373.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Enterobacteriaceae
  • genus: Enterobacter
  • species: Enterobacter cloacae
  • full scientific name: Enterobacter cloacae (Jordan 1890) Hormaeche and Edwards 1960 (Approved Lists 1980)

  • synonyms

    @refsynonym
    20215Cloaca cloacae
    20215Bacillus cloacae
    20215Bacterium cloacae

@ref: 9103

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacteriales, not validated

family: Enterobacteriaceae

genus: Enterobacter

species: Enterobacter cloacae subsp. cloacae

full scientific name: Enterobacter cloacae subsp. cloacae (Jordan 1890) Hoffmann et al. 2005

type strain: yes

Morphology

cell morphology

  • @ref: 118316
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
9103NUTRIENT AGAR (DSMZ Medium 1)yeshttps://mediadive.dsmz.de/medium/1Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
41820MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
9103TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yeshttps://mediadive.dsmz.de/medium/92Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
9103COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
118316CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
9103positivegrowth30mesophilic
41820positivegrowth30mesophilic
67770positivegrowth37mesophilic
118316positivegrowth10-41
118316nogrowth5psychrophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 118316
  • oxygen tolerance: facultative anaerobe

antibiogram

@refmediumincubation temperatureincubation timeoxygen conditionPenicillin Goxacillinampicillinticarcillinmezlocillincefalotincefazolincefotaximeaztreonamimipenemtetracyclinechloramphenicolgentamycinamikacinvancomycinerythromycinlincomycinofloxacinnorfloxacincolistinpipemidic acidnitrofurantoinbacitracinpolymyxin bkanamycinneomycindoxycyclineceftriaxoneclindamycinfosfomycinmoxifloxacinlinezolidnystatinquinupristin/dalfopristinteicoplaninpiperacillin/tazobactam
9103Mueller-Hinton Agar301aerob00020200028303028242022610-12038-40401432180162218202602432000020
9103Mueller-Hinton Agar30aerob0001820062830302626-28222401203832143016-18016221818-2026-2802634000020
9103Mueller-Hinton Agar00020-2220-220030323026-28282224012038401430-32180163420202802834000022
9103Mueller Hinton30aerob00016-18200026302824-262020-2222-24012030-32321230140142220202602430000018

spore formation

  • @ref: 118316
  • spore formation: no

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836830849L-arabinose+fermentation
6836827613amygdalin+fermentation
6836828053melibiose+fermentation
6836817992sucrose+fermentation
6836862345L-rhamnose+fermentation
6836830911sorbitol+fermentation
6836816899D-mannitol+fermentation
6836817634D-glucose+fermentation
683685291gelatin-hydrolysis
6836827897tryptophan-energy source
6836816199urea-hydrolysis
6836816947citrate+assimilation
6836818257ornithine+degradation
6836825094lysine-degradation
6836829016arginine+hydrolysis
11831629864mannitol+fermentation
11831616947citrate+carbon source
11831617234glucose+fermentation
11831617716lactose+fermentation
11831617632nitrate+reduction
11831616301nitrite-reduction
11831615792malonate+assimilation
118316132112sodium thiosulfate-builds gas from
11831617234glucose+degradation

antibiotic resistance

  • @ref: 118316
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

@refChebi-IDmetaboliteproduction
6836815688acetoinyes
6836835581indoleno
6836816136hydrogen sulfideno
11831635581indoleno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole testmethylred-test
6836815688acetoin+
6836835581indole-
11831615688acetoin+
11831617234glucose-

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase+3.2.1.21
68382alpha-glucosidase+3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase+3.2.1.23
68382alpha-galactosidase+3.2.1.22
68382naphthol-AS-BI-phosphohydrolase+
68382acid phosphatase+3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin+3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase-
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)+
68382esterase (C 4)+
68382alkaline phosphatase+3.1.3.1
68368cytochrome oxidase-1.9.3.1
68368gelatinase-
68368tryptophan deaminase-4.1.99.1
68368urease-3.5.1.5
68368ornithine decarboxylase+4.1.1.17
68368lysine decarboxylase-4.1.1.18
68368arginine dihydrolase+3.5.3.6
68368beta-galactosidase+3.2.1.23
118316oxidase-
118316beta-galactosidase+3.2.1.23
118316alcohol dehydrogenase+1.1.1.1
118316gelatinase-
118316catalase+1.11.1.6
118316lysine decarboxylase-4.1.1.18
118316ornithine decarboxylase+4.1.1.17
118316phenylalanine ammonia-lyase-4.3.1.24
118316tryptophan deaminase-
118316urease-3.5.1.5

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
118316-+++-+--+-++++-++---

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGELGLUMANINOSorRHASACMELAMYARAOX
9103++-++----+-+++/-++++++-
9103++-++----+-+++++++++-
9103++-++----+-++-++++++-
9103++-++----+-++-++++++-

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
118316+++++-+++++++++++++++-++-------++++-+----+-++----+++-++++--+++----------+--+--+++-+---+-+++++++----

Isolation, sampling and environmental information

isolation

@refsample type
9103spinal fluid
67770Spinal fluid
118316Human, Spinal fluid

isolation source categories

  • Cat1: #Host Body Product
  • Cat2: #Fluids
  • Cat3: #Cerebrospinal fluid

Safety information

risk assessment

@refpathogenicity humanpathogenicity animalbiosafety levelbiosafety level comment
9103yesyes2Risk group (German classification)
1183162Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Enterobacter cloacae subsp. cloacae gene for 16S rRNA, partial sequence, strain: NBRC 13535AB6804261465ena336306
20218Enterobacter cloacae 16S ribosomal RNA, partial 3' end, strain NCTC 10005 TAJ001236509ena550
20218Enterobacter cloacae 16S ribosomal RNA, partial 5' end, strain NCTC 10005 TAJ001245509ena550
20218Enterobacter cloacae partial 16S rRNA gene, strain ATCC13047TAJ2514691511ena550
20218Enterobacter cloacae partial 16S rRNA gene, strain ATCC 13047TAJ417484420ena550
20218Enterobacter cloacae strain ATCC 13047 16S ribosomal RNA gene, partial sequenceFJ971883795ena550
20218Enterobacter cloacae partial 16S rRNA gene, strain ATCC 13047FM207092397ena550
20218Enterobacter cloacae strain ATCC 13047 16S ribosomal RNA gene, partial sequenceKC7687861369ena550
20218Enterobacter cloacae strain ATCC 13047 16S ribosomal RNA gene, partial sequenceKC768826699ena550
20218Enterobacter cloacae 16S ribosomal RNA gene, partial sequenceU65720517ena550
9103Enterobacter cloacae subsp. cloacae partial 16S rRNA gene, type strain DSM 30054THE9782721529ena336306

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Enterobacter cloacae DSM 30054GCA_013376815completencbi550
66792Enterobacter cloacae subsp. cloacae ATCC 13047GCA_000025565completencbi716541
66792Achromobacter sp. strain ATCC13047134375.18wgspatric134375
66792Enterobacter cloacae ATCC 13047550.124wgspatric550
66792Enterobacter cloacae strain ATCC 13047550.1096wgspatric550
66792Enterobacter cloacae strain DSM 30054550.2797completepatric550
66792Enterobacter cloacae strain FDAARGOS 1431550.3089completepatric550
66792Enterobacter cloacae strain NCTC10005550.1674wgspatric550
66792Enterobacter cloacae subsp. cloacae ATCC 13047716541.4completepatric716541
66792Enterobacter cloacae subsp. cloacae ATCC 13047716541.43plasmidpatric716541
66792Enterobacter cloacae subsp. cloacae ATCC 13047716541.44plasmidpatric716541
66792Enterobacter cloacae cloacae ATCC 130472627854262draftimg550
66792Enterobacter cloacae cloacae ATCC 130472663762965draftimg550
66792Enterobacter cloacae cloacae ATCC 13047646564529completeimg550
67770Enterobacter cloacae ATCC 13047GCA_001299075scaffoldncbi550
67770Enterobacter cloacae ATCC 13047GCA_000755525scaffoldncbi550
67770Enterobacter cloacae ATCC 13047GCA_001997105scaffoldncbi550
67770Enterobacter cloacae NCTC10005GCA_900447605contigncbi550
66792Enterobacter cloacae DSM 30054GCA_021469225contigncbi550

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileyes88.112no
flagellatedno56.661no
gram-positiveno98.066no
anaerobicno97.068no
aerobicyes81.976no
halophileno87.171no
spore-formingno92.491no
thermophileno99.562yes
glucose-utilyes94.642no
glucose-fermentyes93.379yes

External links

@ref: 9103

culture collection no.: DSM 30054, ATCC 13047, CIP 60.85, IFO 13535, NBRC 13535, NCTC 10005, WDCM 00083, NCDC 279-56, JCM 1232, ACM 1975, BCRC 10401, CCUG 28448, CCUG 29301, CCUG 6323, CDC 442-68, CECT 194, HAMBI 1295, HAMBI 96, HUT 8108, IAM 12349, KCTC 2361, LMG 2783, NCIMB 10101, VTT E-84198

straininfo link

  • @ref: 73864
  • straininfo: 13640

literature

topicPubmed-IDtitleauthorsjournalyearmeshtopic2DOI
Metabolism1849886Direct evidence of the Entner-Doudoroff pathway operating in the metabolism of D-glucosamine in bacteria.Iwamoto R, Imanaga YJ Biochem1991*Aldose-Ketose Isomerases, Bacteria/*metabolism, Calcium/pharmacology, Carbohydrate Epimerases/metabolism, Enterobacter/metabolism, Glucosamine/*metabolism, Glucose 1-Dehydrogenase, Glucose Dehydrogenases/metabolism, Hydro-Lyases/metabolism, PQQ Cofactor, Pseudomonas fluorescens/metabolism, Quinolones/pharmacology, Rhizobium/metabolismEnzymology
Pathogenicity1915384In vitro phagocytic interaction between Trichomonas vaginalis isolates and bacteria.Juliano C, Cappuccinelli P, Mattana AEur J Clin Microbiol Infect Dis1991Animals, Enterobacter cloacae/immunology, Escherichia coli/immunology, Female, Gram-Negative Bacteria/*immunology, Gram-Positive Bacteria/*immunology, Humans, Lactobacillus/immunology, *Phagocytosis, Pseudomonas aeruginosa/immunology, Staphylococcus aureus/immunology, Trichomonas vaginalis/*immunology, Vagina/microbiology/parasitology10.1007/BF01963936
Biotechnology2127724[Microbial growth in parenteral nutrition. II. Effects of osmolality].Vilchez Medina T, Montero Herrero CG, Garcia Curiel A, Lluch Colomer A, Rodriguez Cobacho A, Atienza Fernandez MNutr Hosp1990Bacteria/growth & development, Candida albicans/growth & development, Colony Count, Microbial, *Food Microbiology, *Food, Formulated, Osmolar Concentration, *Parenteral Nutrition
Enzymology2485358[A microbial growth study in parenteral nutrition].Vilchez Medina T, Montero Herrero CG, Garcia Curiel A, Atienza Fernandez MNutr Hosp1989Bacteria/*growth & development/isolation & purification, Candida albicans/*growth & development/isolation & purification, Colony Count, Microbial, Culture Media, Drug Contamination, *Parenteral Nutrition, Time FactorsPhylogeny
Enzymology2621176A comparison of aztreonam and imipenem induction of class I beta-lactamase in Enterobacter cloacae ATCC 13047.Gatus BJ, Bell SM, Jimenez ASJ Antimicrob Chemother1989Aztreonam/*pharmacology, Culture Media, Enterobacter/drug effects/*enzymology/growth & development, Enterobacteriaceae/*enzymology, Enzyme Induction/drug effects, Imipenem/*pharmacology, Kinetics, Microbial Sensitivity Tests, Penicillinase/*biosynthesisCultivation10.1093/jac/24.6.841
Pathogenicity3258859Comparison of glycine enhancement with cefoxitin induction of class 1 beta-lactamase production in Enterobacter cloacae ATCC 13047.Gatus BJ, Bell SM, Jimenez ASJ Antimicrob Chemother1988Cefoxitin/*pharmacology, Cell Division/drug effects, Enterobacter/*drug effects/enzymology, Enterobacteriaceae/*drug effects, Enzyme Induction/drug effects, Glycine/*pharmacology, Isoelectric Point, Kinetics, beta-Lactamases/*biosynthesis/isolation & purificationEnzymology10.1093/jac/21.2.163
Pathogenicity8418297An electronmicroscope study of the effect of sulphadiazine and trimethoprim on Enterobacter cloacae.Richards RM, Xing JZ, Gregory DW, Marshall DJ Med Microbiol1993Cell Membrane/drug effects, Colony Count, Microbial, Drug Interactions, Drug Resistance, Microbial, Enterobacter cloacae/*drug effects/ultrastructure, Microscopy, Electron, Ribosomes/drug effects, Sulfadiazine/*pharmacology, Trimethoprim/*pharmacology10.1099/00222615-38-1-64
Metabolism8444815Peptidoglycan tripeptide content and cross-linking are altered in Enterobacter cloacae induced to produce AmpC beta-lactamase by glycine and D-amino acids.Ottolenghi AC, Caparros M, de Pedro MAJ Bacteriol1993Amino Acid Sequence, Amino Acids/metabolism, *Bacterial Proteins, Chromatography, High Pressure Liquid, Enterobacter cloacae/*enzymology/ultrastructure, Enzyme Induction, Glycine/metabolism, Kinetics, Microscopy, Electron, Molecular Sequence Data, Peptidoglycan/chemistry/*metabolism, beta-Lactamases/biosynthesis/*metabolismEnzymology10.1128/jb.175.5.1537-1542.1993
Enzymology8554767Ascorbate as an induction inhibitor of beta-lactamase in a strain of Enterobacter cloacae.Shoeb HA, Al-Shora HI, Abdel-Salam TLett Appl Microbiol1995Aerobiosis, Ampicillin/pharmacology, Ampicillin Resistance, Anaerobiosis, Ascorbic Acid/*pharmacology, Enterobacter cloacae/drug effects/*enzymology/genetics/physiology, Enzyme Induction, Microbial Sensitivity Tests, Penicillins/pharmacology, beta-Lactamases/*biosynthesisPathogenicity10.1111/j.1472-765x.1995.tb01091.x
Pathogenicity9624478Initial concentration-time profile of gentamicin determines efficacy against Enterobacter cloacae ATCC 13047.Rayner CR, Ioannides-Demos LL, Brien JA, Liolios LL, Spicer WJAntimicrob Agents Chemother1998Anti-Bacterial Agents/*administration & dosage/pharmacology, Area Under Curve, Enterobacter cloacae/*drug effects, Gentamicins/*administration & dosage/pharmacology, Metabolic Clearance Rate, Microbial Sensitivity Tests, Time Factors10.1128/AAC.42.6.1370
Metabolism9862646Mechanism of inhibition of tannic acid and related compounds on the growth of intestinal bacteria.Chung KT, Lu Z, Chou MWFood Chem Toxicol1998Bacteria/*drug effects/growth & development/isolation & purification, Depression, Chemical, Gallic Acid/analogs & derivatives/metabolism/pharmacology, Humans, Hydrolyzable Tannins/analogs & derivatives/metabolism/*pharmacology, Intestines/*drug effects/microbiology, Iron/metabolism, Microbial Sensitivity Tests, Propyl Gallate/metabolism/pharmacology, Siderophores/metabolismPathogenicity10.1016/s0278-6915(98)00086-6
Pathogenicity9920128Analysis of mutations to gyrA in quinolone-resistant clinical isolates of Enterobacter cloacae.Dekitsch C, Schein R, Markopulos E, Kuen B, Graninger W, Georgopoulos AJ Med Microbiol1999Amino Acid Substitution, Anti-Infective Agents/*pharmacology, Ciprofloxacin/pharmacology, Codon/genetics, DNA Gyrase, DNA Mutational Analysis, DNA Topoisomerases, Type II/*genetics, Deoxyribonucleases, Type II Site-Specific, Drug Resistance, Microbial/genetics, Enterobacter cloacae/drug effects/*genetics/isolation & purification, Enterobacteriaceae Infections/*microbiology, Humans, Microbial Sensitivity Tests, Ofloxacin/pharmacology, Point Mutation/*genetics, Polymorphism, Restriction Fragment LengthEnzymology10.1099/00222615-48-1-73
Phylogeny10932747[Application of gas chromatography in the identification of Enterobacter cloacae, Enterobacter aerogenes, and Enterobacter agglomerans].Robles Valderrama E, Ramirez Garcia P, Gonzalez Arreaga ME, Sainz Morales MG, Martinez Rodriguez B, Duran Diaz A, Chavez Ramirez DRev Latinoam Microbiol1999*Bacteriological Techniques, Biomarkers, *Chromatography, Gas, Enterobacter/classification/*isolation & purification, Enterobacter cloacae/isolation & purification, Esters/analysis, Fatty Acids/analysis, Palmitic Acid/analysis, Species Specificity, Stearic Acids/analysisEnzymology
Phylogeny11682499PCR analyses of tRNA intergenic spacer, 16S-23S internal transcribed spacer, and randomly amplified polymorphic DNA reveal inter- and intraspecific relationships of Enterobacter cloacae strains.Clementino MM, de Filippis I, Nascimento CR, Branquinho R, Rocha CL, Martins OBJ Clin Microbiol2001DNA, Intergenic, DNA, Ribosomal Spacer/genetics, Enterobacter cloacae/*classification/genetics, Enterobacteriaceae Infections/microbiology, Humans, Phylogeny, Polymerase Chain Reaction/*methods, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, RNA, Ribosomal, 23S/genetics, RNA, Transfer/genetics, Random Amplified Polymorphic DNA Technique, Reproducibility of Results, *RibotypingPathogenicity10.1128/JCM.39.11.3865-3870.2001
Pathogenicity12120877Remarkable substituent effects on antimicrobial activities of 1,3-diorganylimidazolidinium salts.Cetinkaya E, Denizci A, Ozdemir I, Ozturk HT, Karaboz I, Cetinkaya BJ Chemother2002Anti-Bacterial Agents, Anti-Infective Agents/chemistry/*pharmacology/therapeutic use, Candida albicans/*drug effects, Gram-Negative Bacteria/*drug effects, Gram-Positive Bacteria/*drug effects, Humans, Imidazoles/chemistry/*pharmacology/therapeutic use, Microbial Sensitivity Tests, Structure-Activity Relationship10.1179/joc.2002.14.3.241
Pathogenicity12650667Growth inhibition of intestinal bacteria and mutagenicity of 2-, 3-, 4-aminobiphenyls, benzidine, and biphenyl.Chung KT, Adris PToxicol In Vitro2003Aminobiphenyl Compounds/*toxicity, Benzidines/*toxicity, Biphenyl Compounds/*toxicity, Gram-Negative Bacteria/drug effects/growth & development, Gram-Positive Bacteria/drug effects/growth & development, Humans, Intestines/*microbiology, Mutagenicity Tests, Mutagens/*toxicity10.1016/s0887-2333(02)00131-5
Biotechnology14607403A simple method for semi-preparative-scale production and recovery of enterocin AS-48 derived from Enterococcus faecalis subsp. liquefaciens A-48-32.Abriouel H, Valdivia E, Martinez-Bueno M, Maqueda M, Galvez AJ Microbiol Methods2003Bacteriocins/*biosynthesis/isolation & purification, Chromatography, Gel, Enterococcus faecalis/*metabolism, Fermentation, Food Preservation/methodsEnzymology10.1016/s0167-7012(03)00202-1
Phylogeny16156121A toxaphene-degrading bacterium related to Enterobacter cloacae, strain D1 isolated from aged contaminated soil in Nicaragua.Lacayo-Romero M, Quillaguaman J, van Bavel B, Mattiasson BSyst Appl Microbiol2005Biodegradation, Environmental, DNA, Ribosomal/analysis, Enterobacter cloacae/*classification/metabolism, Nicaragua, Phylogeny, *Soil Microbiology, Soil Pollutants/metabolism, Toxaphene/*metabolismMetabolism10.1016/j.syapm.2005.03.015
Pathogenicity18353225[Detection of plasmid-mediated carbapenem-hydrolyzing beta-lactamase KPC-2 in a strain of carbapenem-resistant Enterobacter cloacae].Cai JC, Zhou HW, Chen GX, Zhang RZhonghua Yi Xue Za Zhi2008Carbapenems/*pharmacology, China, Enterobacter cloacae/*drug effects/*enzymology/genetics, Enterobacteriaceae Infections/microbiology, Humans, Plasmids/genetics, beta-Lactam Resistance/genetics, beta-Lactamases/genetics/*metabolismEnzymology
Phylogeny18422941Involvement of Enterobacter cloacae in the mortality of the fish, Mugil cephalus.Sekar VT, Santiago TC, Vijayan KK, Alavandi SV, Raj VS, Rajan JJ, Sanjuktha M, Kalaimani NLett Appl Microbiol2008Animals, Base Sequence, DNA, Bacterial/analysis/genetics, Enterobacter cloacae/genetics/isolation & purification/*pathogenicity, Enterobacteriaceae Infections/microbiology/mortality/pathology/*veterinary, Fish Diseases/*microbiology/mortality/pathology, India, Kidney Tubules/pathology, Molecular Sequence Data, RNA, Ribosomal, 16S/genetics, Smegmamorpha/*microbiologyGenetics10.1111/j.1472-765X.2008.02365.x
Pathogenicity18539361Synthesis, characterization and structure-activity relationship analysis of novel depsides as potential antibacterials.Lv PC, Xiao ZP, Fang RQ, Li HQ, Zhu HL, Liu CHEur J Med Chem2008Anti-Bacterial Agents/chemical synthesis/*chemistry/*pharmacology, Bacteria/*drug effects, Crystallography, X-Ray, Depsides/chemical synthesis/*chemistry/*pharmacology, *Drug Design, Microbial Sensitivity Tests, Structure-Activity Relationship10.1016/j.ejmech.2008.04.019
Phylogeny19346362Simultaneous cellulose degradation and electricity production by Enterobacter cloacae in a microbial fuel cell.Rezaei F, Xing D, Wagner R, Regan JM, Richard TL, Logan BEAppl Environ Microbiol2009Bioelectric Energy Sources/*microbiology, Cellulose/*metabolism, Cluster Analysis, DNA Fingerprinting, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, *Electricity, Electrophoresis, Polyacrylamide Gel, Enterobacter cloacae/*classification/*isolation & purification/metabolism, Molecular Sequence Data, Nucleic Acid Denaturation, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sequence Homology, Nucleic AcidMetabolism10.1128/AEM.02600-08
Phylogeny19578150Enterobacter oryzae sp. nov., a nitrogen-fixing bacterium isolated from the wild rice species Oryza latifolia.Peng G, Zhang W, Luo H, Xie H, Lai W, Tan ZInt J Syst Evol Microbiol2009Anti-Bacterial Agents/pharmacology, Bacterial Proteins/chemistry, Bacterial Typing Techniques, DNA, Bacterial/analysis, Drug Resistance, Bacterial, Enterobacter/*classification/genetics/isolation & purification/physiology, Fatty Acids/analysis, Genes, rRNA, Genotype, Molecular Sequence Data, *Nitrogen Fixation, Oryza/*microbiology, Phenotype, Phylogeny, Plant Roots/microbiology, Polymerase Chain Reaction/methods, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Species SpecificityGenetics10.1099/ijs.0.65484-0
Enzymology20041896High prevalence of mutators among Enterobacter cloacae nosocomial isolates and their association with antimicrobial resistance and repetitive detection.Matsushima A, Takakura S, Fujihara N, Saito T, Ito I, Iinuma Y, Ichiyama SClin Microbiol Infect2010Anti-Bacterial Agents/*pharmacology, Bacterial Typing Techniques, Cross Infection/epidemiology/*microbiology, *Drug Resistance, Bacterial, Electrophoresis, Gel, Pulsed-Field, Enterobacter cloacae/classification/*drug effects/genetics/*isolation & purification, Enterobacteriaceae Infections/epidemiology/*microbiology, Genotype, Humans, Molecular Typing, Prevalence, Rifampin/pharmacologyPathogenicity10.1111/j.1469-0691.2009.03145.x
Genetics20207761Complete genome sequence of Enterobacter cloacae subsp. cloacae type strain ATCC 13047.Ren Y, Ren Y, Zhou Z, Guo X, Li Y, Feng L, Wang LJ Bacteriol2010Enterobacter cloacae/*genetics, Genome, Bacterial/*genetics, Molecular Sequence Data, Sequence Analysis, DNATranscriptome10.1128/JB.00067-10
Pathogenicity20235754Novel depsides as potential anti-inflammatory agents with potent inhibitory activity against Escherichia coli-induced interleukin-8 production.Lv PC, Xiong J, Chen J, Wang KR, Mao WJ, Zhu HLJ Enzyme Inhib Med Chem2010Anti-Bacterial Agents/*chemical synthesis/chemistry/pharmacology, Anti-Inflammatory Agents/chemical synthesis/*chemistry/pharmacology, Depsides, Escherichia coli/drug effects/*immunology, Gram-Negative Bacteria/drug effects, Gram-Positive Bacteria/drug effects, Interleukin-8/*biosynthesis, Magnetic Resonance Spectroscopy, Microbial Sensitivity Tests, Molecular Structure, Spectrometry, Mass, Electrospray Ionization, Structure-Activity RelationshipBiotechnology10.3109/14756360903357551
Metabolism21576447SugE, a new member of the SMR family of transporters, contributes to antimicrobial resistance in Enterobacter cloacae.He GX, Zhang C, Crow RR, Thorpe C, Chen H, Kumar S, Tsuchiya T, Varela MFAntimicrob Agents Chemother2011Anti-Bacterial Agents/*pharmacology, Base Sequence, Drug Resistance, Multiple, Bacterial/genetics, Enterobacter cloacae/*drug effects/genetics/*metabolism, Escherichia coli/genetics, Escherichia coli Proteins/genetics/*metabolism, Gene Knockout Techniques, Membrane Proteins/genetics/*metabolism, Membrane Transport Proteins/biosynthesis/genetics/*metabolism, Microbial Sensitivity Tests, Molecular Chaperones/genetics/*metabolism, Reverse Transcriptase Polymerase Chain Reaction, Sequence Analysis, DNA, Sequence DeletionTranscriptome10.1128/AAC.00094-11
Metabolism21822795EmmdR, a new member of the MATE family of multidrug transporters, extrudes quinolones from Enterobacter cloacae.He GX, Thorpe C, Walsh D, Crow R, Chen H, Kumar S, Varela MFArch Microbiol2011Anti-Infective Agents/metabolism, Antiporters/genetics/*metabolism, Bacterial Proteins/genetics/*metabolism, Biological Transport, Active, Cloning, Molecular, Drug Resistance, Multiple, Bacterial, Enterobacter cloacae/drug effects/*genetics/metabolism, Escherichia coli/genetics/metabolism, Membrane Transport Proteins/genetics, Microbial Sensitivity Tests, Quinolones/*metabolismPathogenicity10.1007/s00203-011-0738-1
Phylogeny22410932Pathogen identification with laser-induced breakdown spectroscopy: the effect of bacterial and biofluid specimen contamination.Mohaidat QI, Sheikh K, Palchaudhuri S, Rehse SJAppl Opt2012Enterobacter cloacae/classification/*isolation & purification, Escherichia coli/classification/*isolation & purification, *Lasers, Spectrum Analysis/*methods, Staphylococcus epidermidis/classification/isolation & purificationEnzymology10.1364/AO.51.000B99
Phylogeny23759866Enterobacter siamensis sp. nov., a transglutaminase-producing bacterium isolated from seafood processing wastewater in Thailand.Khunthongpan S, Bourneow C, H-Kittikun A, Tanasupawat S, Benjakul S, Sumpavapol PJ Gen Appl Microbiol2013Aerobiosis, Anaerobiosis, Bacterial Typing Techniques, Base Composition, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Enterobacter/*classification/*enzymology/genetics/isolation & purification, Fatty Acids/analysis, Industrial Waste, Microscopy, Electron, Scanning, Microscopy, Phase-Contrast, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/genetics, Seafood, Sequence Analysis, DNA, Thailand, Transglutaminases/*metabolism, Waste Water/*microbiologyEnzymology10.2323/jgam.59.135
Enzymology24043123Development of indole-3-acetic acid-producing Escherichia coli by functional expression of IpdC, AspC, and Iad1.Romasi EF, Lee JJ Microbiol Biotechnol2013Biosynthetic Pathways/*genetics, Cloning, Molecular, Corynebacterium glutamicum/genetics, Enterobacter cloacae/enzymology/genetics, Escherichia coli/enzymology/*genetics/*metabolism, Gene Expression, Indoleacetic Acids/*metabolism, Metabolic Engineering/*methods, Recombinant Proteins/genetics/metabolism, Ustilago/enzymology/geneticsMetabolism10.4014/jmb.1308.08082
Enzymology25310871Kinetics of biological decolorisation of anthraquinone based Reactive Blue 19 using an isolated strain of Enterobacter sp.F NCIM 5545.Holkar CR, Pandit AB, Pinjari DVBioresour Technol2014Anthraquinones/*chemistry, Biotransformation, DNA, Bacterial/chemistry, Enterobacter/genetics/isolation & purification/*metabolism, Hydrogen-Ion Concentration, Kinetics, Phylogeny, Sequence Analysis, DNA, Spectroscopy, Fourier Transform Infrared, Temperature, Water Purification/*methodsPhylogeny10.1016/j.biortech.2014.09.108
25342683Draft Genome Assemblies of Enterobacter aerogenes CDC 6003-71, Enterobacter cloacae CDC 442-68, and Pantoea agglomerans UA 0804-01.Minogue TD, Daligault HE, Davenport KW, Bishop-Lilly KA, Bruce DC, Chain PS, Coyne SR, Chertkov O, Freitas T, Frey KG, Jaissle J, Koroleva GI, Ladner JT, Palacios GF, Redden CL, Xu Y, Johnson SLGenome Announc201410.1128/genomeA.01073-14
Metabolism25943991Feasibility of biohydrogen production from industrial wastes using defined microbial co-culture.Chen P, Wang Y, Yan L, Wang Y, Li S, Yan X, Wang N, Liang N, Li HBiol Res2015Carboxylic Acids/metabolism, Clostridium acetobutylicum/metabolism, Coculture Techniques, Electric Conductivity, Enterobacter cloacae/metabolism, Feasibility Studies, Fermentation/*physiology, Hydrogen/analysis/*metabolism, *Industrial Waste, Ions/metabolism, Kluyveromyces/metabolism, Metals/metabolism, Microbial Consortia/*physiology, Microbial Interactions/physiology, Renewable Energy, Starch/metabolism, Time Factors, Waste Water/analysisBiotechnology10.1186/s40659-015-0015-x
Enzymology27894288Bactericidal and antioxidant properties of essential oils from the fruits Dennettia tripetala G. Baker.Okoh SO, Iweriegbor BC, Okoh OO, Nwodo UU, I Okoh ABMC Complement Altern Med2016Animals, Annonaceae/*chemistry/toxicity, Anti-Bacterial Agents/*isolation & purification/pharmacology/toxicity, Antioxidants/*pharmacology/toxicity, Cytotoxins/toxicity, Free Radical Scavengers/pharmacology/toxicity, Fruit/chemistry, Hemolysis, Microbial Sensitivity Tests, Oils, Volatile/*pharmacology/toxicity, Plant Extracts/*pharmacology/toxicity, Plant Oils/*pharmacology/toxicity, SheepPhylogeny10.1186/s12906-016-1459-4
Pathogenicity29098912In vitro antimicrobial effects of a novel Pentaherbs concoction for atopic dermatitis.Hon KL, Ip M, Wong CK, Chan BCL, Leung PC, Leung TFJ Dermatolog Treat2017Anti-Infective Agents/*pharmacology/therapeutic use, Dermatitis, Atopic/drug therapy/pathology, Drugs, Chinese Herbal/*pharmacology/therapeutic use, Gram-Negative Bacteria/drug effects, Gram-Positive Bacteria/*drug effects, Humans, Methicillin-Resistant Staphylococcus aureus/drug effects, Microbial Sensitivity Tests, Staphylococcus aureus/drug effects10.1080/09546634.2017.1395804
29472760Genetic Diversity and Functional Analysis of Sigma Factors in Enterobacter cloacae Complex Resourced From Various Niche.Nazir F, Ibrahim M, Zaman G, Hussain A, Yar AM, Bo ZEvol Bioinform Online201810.1177/1176934318754878
Enzymology30188999Stability and low induction propensity of cefiderocol against chromosomal AmpC beta-lactamases of Pseudomonas aeruginosa and Enterobacter cloacae.Ito A, Nishikawa T, Ota M, Ito-Horiyama T, Ishibashi N, Sato T, Tsuji M, Yamano YJ Antimicrob Chemother2018Anti-Bacterial Agents/*pharmacology, Bacterial Proteins/*genetics, Carbapenems/pharmacology, Cephalosporins/*pharmacology, Chromosomes, Bacterial, Drug Resistance, Multiple, Bacterial, Enterobacter cloacae/*drug effects/enzymology/*genetics, Imipenem/pharmacology, Microbial Sensitivity Tests, Pseudomonas aeruginosa/*drug effects/enzymology/genetics, beta-Lactamases/*geneticsPathogenicity10.1093/jac/dky317
31534833Proteomics and bioinformatics analysis reveal potential roles of cadmium-binding proteins in cadmium tolerance and accumulation of Enterobacter cloacae.Chuanboon K, Na Nakorn P, Pannengpetch S, Laengsri V, Nuchnoi P, Isarankura-Na-Ayudhya C, Isarankura-Na-Ayudhya PPeerJ201910.7717/peerj.6904
Metabolism31685460The Transcriptional Repressor SmvR Is Important for Decreased Chlorhexidine Susceptibility in Enterobacter cloacae Complex.Guerin F, Gravey F, Plesiat P, Aubourg M, Beyrouthy R, Bonnet R, Cattoir V, Giard JCAntimicrob Agents Chemother2019Anti-Bacterial Agents/*pharmacology, Bacterial Proteins/genetics/*metabolism, Chlorhexidine/*pharmacology, Computational Biology, Enterobacter cloacae/*drug effects, Microbial Sensitivity Tests, Open Reading Frames/genetics, Reverse Transcriptase Polymerase Chain Reaction, Whole Genome SequencingPathogenicity10.1128/AAC.01845-19
Pathogenicity31813393Dominant symbiotic bacteria associated with wild medfly populations reveal a bacteriocin-like killing phenotype: a 'cold-case' study.Ciolfi S, Marri LBull Entomol Res2019Animals, Bacteriocins/genetics/metabolism/*pharmacology, Ceratitis capitata/*microbiology, DNA, Bacterial, Enterobacter cloacae/drug effects, Escherichia coli/drug effects, Klebsiella/genetics, Klebsiella oxytoca/genetics/*metabolism, Polymerase Chain Reaction, Salmonella typhimurium/drug effects, Sequence Analysis, DNA, *SymbiosisMetabolism10.1017/S0007485319000816
Phylogeny32424332Genome-wide Analysis of Four Enterobacter cloacae complex type strains: Insights into Virulence and Niche Adaptation.Mustafa A, Ibrahim M, Rasheed MA, Kanwal S, Hussain A, Sami A, Ahmed R, Bo ZSci Rep2020Adaptation, Physiological, Bacterial Proteins/genetics/metabolism, Enterobacter cloacae/classification/*genetics/*pathogenicity/physiology, Enterobacteriaceae Infections/*microbiology, *Genome, Bacterial, Humans, Phylogeny, VirulenceGenetics10.1038/s41598-020-65001-4
32754144Landscape of in vivo Fitness-Associated Genes of Enterobacter cloacae Complex.Guerin F, Lallement C, Goudergues B, Isnard C, Sanguinetti M, Cacaci M, Torelli R, Cattoir V, Giard JCFront Microbiol202010.3389/fmicb.2020.01609
Pathogenicity33007464Characterization and proteomic analysis of outer membrane vesicles from a commensal microbe, Enterobacter cloacae.Bhar S, Edelmann MJ, Jones MKJ Proteomics2020Bacterial Outer Membrane Proteins, *Enterobacter cloacae, Gram-Negative Bacteria, Humans, Proteome, *Proteomics, SymbiosisProteome10.1016/j.jprot.2020.103994
33072020Two Type VI Secretion Systems of Enterobacter cloacae Are Required for Bacterial Competition, Cell Adherence, and Intestinal Colonization.Soria-Bustos J, Ares MA, Gomez-Aldapa CA, Gonzalez-Y-Merchand JA, Giron JA, De la Cruz MAFront Microbiol202010.3389/fmicb.2020.560488
Pathogenicity34102464Antimicrobial activity of MccJ25(G12Y) against gram-negative foodborne pathogens in vitro and in food models.Corbalan N, Quiroga M, Masias E, Peralta D, Barros Velazquez J, Acuna L, Vincent PInt J Food Microbiol2021Animals, Anti-Bacterial Agents/pharmacology, Bacteriocins/*pharmacology, Colony Count, Microbial, Escherichia coli O157/drug effects, Food Handling/*methods, *Food Microbiology, Foodborne Diseases/microbiology/prevention & control, Gram-Negative Bacteria/*drug effects, Salmonella/drug effectsBiotechnology10.1016/j.ijfoodmicro.2021.109267
35222864Biologically formed silver nanoparticles and in vitro study of their antimicrobial activities on resistant pathogens.Ali AR, Anani HAA, Selim FMIran J Microbiol202110.18502/ijm.v13i6.8090

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9103Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 30054)https://www.dsmz.de/collection/catalogue/details/culture/DSM-30054
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41820Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/9905
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68368Automatically annotated from API 20E
68382Automatically annotated from API zym
73864Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID13640.1StrainInfo: A central database for resolving microbial strain identifiers
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