Strain identifier

BacDive ID: 4369

Type strain: Yes

Species: Pluralibacter pyrinus

Strain history: CIP <- 1994, KCTC, Enterobacter pyrinus <- Y.R. Chung, Gyeonsang Univ., Chinju, Korea, "Erwinia pirina"

NCBI tax ID(s): 81476 (species)

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General

@ref: 4547

BacDive-ID: 4369

DSM-Number: 12410

keywords: 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, motile, oval-shaped, plant pathogen

description: Pluralibacter pyrinus DSM 12410 is an aerobe, mesophilic, Gram-negative plant pathogen that was isolated from spot on pear leaf.

NCBI tax id

  • NCBI tax id: 81476
  • Matching level: species

strain history

@refhistory
4547<- CIP <- KCTC <- Y.R. Chung
122092CIP <- 1994, KCTC, Enterobacter pyrinus <- Y.R. Chung, Gyeonsang Univ., Chinju, Korea, "Erwinia pirina"

doi: 10.13145/bacdive4369.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Enterobacteriaceae
  • genus: Pluralibacter
  • species: Pluralibacter pyrinus
  • full scientific name: Pluralibacter pyrinus (Chung et al. 1993) Brady et al. 2013

  • synonyms

    • @ref: 20215
    • synonym: Enterobacter pyrinus

@ref: 4547

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacteriales, not validated

family: Enterobacteriaceae

genus: Pluralibacter

species: Pluralibacter pyrinus

full scientific name: Pluralibacter pyrinus (Chung et al. 1993) Brady et al. 2013

type strain: yes

Morphology

cell morphology

  • @ref: 122092
  • gram stain: negative
  • cell shape: oval-shaped
  • motility: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
4547CASO AGAR (MERCK 105458) (DSMZ Medium 220)yeshttps://mediadive.dsmz.de/medium/220Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water
38163MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
122092CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
4547positivegrowth30mesophilic
38163positivegrowth30mesophilic
58083positivegrowth30-37mesophilic
122092positivegrowth10-37
122092nogrowth5psychrophilic
122092nogrowth41thermophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
58083aerobe
122092facultative anaerobe

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate+builds acid from
68371Potassium 2-ketogluconate+builds acid from
68371gluconate-builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol+builds acid from18333
68371L-fucose-builds acid from18287
68371D-tagatose+builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose-builds acid from32528
68371gentiobiose+builds acid from28066
68371xylitol-builds acid from17151
68371glycogen-builds acid from28087
68371starch-builds acid from28017
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371trehalose+builds acid from27082
68371sucrose+builds acid from17992
68371lactose-builds acid from17716
68371maltose+builds acid from17306
68371cellobiose+builds acid from17057
68371salicin+builds acid from17814
68371esculin+builds acid from4853
68371arbutin+builds acid from18305
68371amygdalin-builds acid from27613
68371N-acetylglucosamine+builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol+builds acid from16899
68371myo-inositol+builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose+builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose+builds acid from16024
68371D-fructose+builds acid from15824
68371D-glucose+builds acid from17634
68371D-galactose+builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-ribose+builds acid from16988
68371L-arabinose+builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol+builds acid from17754
68368L-arabinose+fermentation30849
68368amygdalin+fermentation27613
68368melibiose+fermentation28053
68368sucrose+fermentation17992
68368L-rhamnose+fermentation62345
68368sorbitol-fermentation30911
68368myo-inositol+fermentation17268
68368D-mannitol+fermentation16899
68368D-glucose+fermentation17634
68368gelatin-hydrolysis5291
68368tryptophan-energy source27897
68368urea+hydrolysis16199
68368ornithine+degradation18257
68368lysine+degradation25094
68368arginine-hydrolysis29016
122092mannitol+fermentation29864
122092citrate-carbon source16947
122092glucose+fermentation17234
122092lactose-fermentation17716
122092nitrate+reduction17632
122092nitrite+reduction16301
122092malonate+assimilation15792
122092sodium thiosulfate-builds gas from132112

metabolite production

@refChebi-IDmetaboliteproduction
6836815688acetoinyes
6836835581indoleno
6836816136hydrogen sulfideno
12209235581indoleno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole testmethylred-test
6836815688acetoin+
6836835581indole-
12209215688acetoin+
12209217234glucose-

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382beta-glucosidase+3.2.1.21
68382alpha-glucosidase+3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase+3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase+
68382acid phosphatase+3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin+3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase-
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)-
68382esterase (C 4)+
68382alkaline phosphatase+3.1.3.1
68368cytochrome oxidase-1.9.3.1
68368gelatinase-
68368tryptophan deaminase-4.1.99.1
68368urease+3.5.1.5
68368ornithine decarboxylase+4.1.1.17
68368lysine decarboxylase+4.1.1.18
68368arginine dihydrolase-3.5.3.6
68368beta-galactosidase+3.2.1.23
122092oxidase-
122092beta-galactosidase+3.2.1.23
122092alcohol dehydrogenase-1.1.1.1
122092gelatinase-
122092amylase-
122092caseinase-3.4.21.50
122092catalase+1.11.1.6
122092tween esterase-
122092lecithinase-
122092lipase-
122092lysine decarboxylase-4.1.1.18
122092ornithine decarboxylase-4.1.1.17
122092phenylalanine ammonia-lyase-4.3.1.24
122092protease-
122092tryptophan deaminase-
122092urease+3.5.1.5

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
122092-++--+--+-++-+-+++--

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGELGLUMANINOSorRHASACMELAMYARAOX
4547+-+++-+--+-+++-+++++-
4547+-++--+--+-+++-+++++-

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
122092+--+++/----++++-+-++---+-+++++-+/-++--+/----+--++/--+--++

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentsampling dateisolation date
4547spot on pear leafYusungKorea (north), Democratic People's Republic ofPRKAsia
58083Pear tree,brown leaf spotYusungRepublic of KoreaKORAsia1988
122092Plant, Pear tree, brown leaf spotYusungRepublic of KoreaKORAsia1988

isolation source categories

Cat1Cat2Cat3
#Host#Plants#Tree
#Host Body-Site#Plant#Leaf (Phyllosphere)

Safety information

risk assessment

@refpathogenicity plantbiosafety levelbiosafety level comment
4547yes1Risk group (German classification)
1220922Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
4547Enterobacter pyrinus 16S rRNA gene tRNA-Glu gene and partial 23S rRNA geneAJ0104861929ena81476
4547Pluralibacter pyrinus partial 16S rRNA gene, type strain DSM12410TLN8750361535ena81476

External links

@ref: 4547

culture collection no.: DSM 12410, ATCC 49851, CDC G6570, CIP 104019, KCTC 2520, LMG 22970, CCUG 48320, CFBP 4168

straininfo link

  • @ref: 73860
  • straininfo: 42718

Reference

@idauthorscataloguedoi/urltitle
4547Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 12410)https://www.dsmz.de/collection/catalogue/details/culture/DSM-12410
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
38163Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/15881
58083Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 48320)https://www.ccug.se/strain?id=48320
68368Automatically annotated from API 20E
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
73860Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID42718.1StrainInfo: A central database for resolving microbial strain identifiers
122092Curators of the CIPCollection of Institut Pasteur (CIP 104019)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20104019