Strain identifier
BacDive ID: 4369
Type strain:
Species: Pluralibacter pyrinus
Strain history: CIP <- 1994, KCTC, Enterobacter pyrinus <- Y.R. Chung, Gyeonsang Univ., Chinju, Korea, "Erwinia pirina"
NCBI tax ID(s): 81476 (species)
General
@ref: 4547
BacDive-ID: 4369
DSM-Number: 12410
keywords: 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, motile, oval-shaped, plant pathogen
description: Pluralibacter pyrinus DSM 12410 is an aerobe, mesophilic, Gram-negative plant pathogen that was isolated from spot on pear leaf.
NCBI tax id
- NCBI tax id: 81476
- Matching level: species
strain history
@ref | history |
---|---|
4547 | <- CIP <- KCTC <- Y.R. Chung |
122092 | CIP <- 1994, KCTC, Enterobacter pyrinus <- Y.R. Chung, Gyeonsang Univ., Chinju, Korea, "Erwinia pirina" |
doi: 10.13145/bacdive4369.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Enterobacterales
- family: Enterobacteriaceae
- genus: Pluralibacter
- species: Pluralibacter pyrinus
- full scientific name: Pluralibacter pyrinus (Chung et al. 1993) Brady et al. 2013
synonyms
- @ref: 20215
- synonym: Enterobacter pyrinus
@ref: 4547
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Enterobacteriales, not validated
family: Enterobacteriaceae
genus: Pluralibacter
species: Pluralibacter pyrinus
full scientific name: Pluralibacter pyrinus (Chung et al. 1993) Brady et al. 2013
type strain: yes
Morphology
cell morphology
- @ref: 122092
- gram stain: negative
- cell shape: oval-shaped
- motility: yes
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
4547 | CASO AGAR (MERCK 105458) (DSMZ Medium 220) | yes | https://mediadive.dsmz.de/medium/220 | Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water |
38163 | MEDIUM 72- for trypto casein soja agar | yes | Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g) | |
122092 | CIP Medium 72 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
4547 | positive | growth | 30 | mesophilic |
38163 | positive | growth | 30 | mesophilic |
58083 | positive | growth | 30-37 | mesophilic |
122092 | positive | growth | 10-37 | |
122092 | no | growth | 5 | psychrophilic |
122092 | no | growth | 41 | thermophilic |
Physiology and metabolism
oxygen tolerance
@ref | oxygen tolerance |
---|---|
58083 | aerobe |
122092 | facultative anaerobe |
metabolite utilization
@ref | metabolite | utilization activity | kind of utilization tested | Chebi-ID |
---|---|---|---|---|
68371 | Potassium 5-ketogluconate | + | builds acid from | |
68371 | Potassium 2-ketogluconate | + | builds acid from | |
68371 | gluconate | - | builds acid from | 24265 |
68371 | L-arabitol | - | builds acid from | 18403 |
68371 | D-arabitol | + | builds acid from | 18333 |
68371 | L-fucose | - | builds acid from | 18287 |
68371 | D-tagatose | + | builds acid from | 16443 |
68371 | D-lyxose | - | builds acid from | 62318 |
68371 | turanose | - | builds acid from | 32528 |
68371 | gentiobiose | + | builds acid from | 28066 |
68371 | xylitol | - | builds acid from | 17151 |
68371 | glycogen | - | builds acid from | 28087 |
68371 | starch | - | builds acid from | 28017 |
68371 | melezitose | - | builds acid from | 6731 |
68371 | inulin | - | builds acid from | 15443 |
68371 | trehalose | + | builds acid from | 27082 |
68371 | sucrose | + | builds acid from | 17992 |
68371 | lactose | - | builds acid from | 17716 |
68371 | maltose | + | builds acid from | 17306 |
68371 | cellobiose | + | builds acid from | 17057 |
68371 | salicin | + | builds acid from | 17814 |
68371 | esculin | + | builds acid from | 4853 |
68371 | arbutin | + | builds acid from | 18305 |
68371 | amygdalin | - | builds acid from | 27613 |
68371 | N-acetylglucosamine | + | builds acid from | 59640 |
68371 | methyl alpha-D-glucopyranoside | - | builds acid from | 320061 |
68371 | methyl alpha-D-mannoside | - | builds acid from | 43943 |
68371 | D-sorbitol | - | builds acid from | 17924 |
68371 | D-mannitol | + | builds acid from | 16899 |
68371 | myo-inositol | + | builds acid from | 17268 |
68371 | galactitol | - | builds acid from | 16813 |
68371 | L-rhamnose | + | builds acid from | 62345 |
68371 | L-sorbose | - | builds acid from | 17266 |
68371 | D-mannose | + | builds acid from | 16024 |
68371 | D-fructose | + | builds acid from | 15824 |
68371 | D-glucose | + | builds acid from | 17634 |
68371 | D-galactose | + | builds acid from | 12936 |
68371 | methyl beta-D-xylopyranoside | - | builds acid from | 74863 |
68371 | ribitol | - | builds acid from | 15963 |
68371 | L-xylose | - | builds acid from | 65328 |
68371 | D-ribose | + | builds acid from | 16988 |
68371 | L-arabinose | + | builds acid from | 30849 |
68371 | D-arabinose | - | builds acid from | 17108 |
68371 | erythritol | - | builds acid from | 17113 |
68371 | glycerol | + | builds acid from | 17754 |
68368 | L-arabinose | + | fermentation | 30849 |
68368 | amygdalin | + | fermentation | 27613 |
68368 | melibiose | + | fermentation | 28053 |
68368 | sucrose | + | fermentation | 17992 |
68368 | L-rhamnose | + | fermentation | 62345 |
68368 | sorbitol | - | fermentation | 30911 |
68368 | myo-inositol | + | fermentation | 17268 |
68368 | D-mannitol | + | fermentation | 16899 |
68368 | D-glucose | + | fermentation | 17634 |
68368 | gelatin | - | hydrolysis | 5291 |
68368 | tryptophan | - | energy source | 27897 |
68368 | urea | + | hydrolysis | 16199 |
68368 | ornithine | + | degradation | 18257 |
68368 | lysine | + | degradation | 25094 |
68368 | arginine | - | hydrolysis | 29016 |
122092 | mannitol | + | fermentation | 29864 |
122092 | citrate | - | carbon source | 16947 |
122092 | glucose | + | fermentation | 17234 |
122092 | lactose | - | fermentation | 17716 |
122092 | nitrate | + | reduction | 17632 |
122092 | nitrite | + | reduction | 16301 |
122092 | malonate | + | assimilation | 15792 |
122092 | sodium thiosulfate | - | builds gas from | 132112 |
metabolite production
@ref | Chebi-ID | metabolite | production |
---|---|---|---|
68368 | 15688 | acetoin | yes |
68368 | 35581 | indole | no |
68368 | 16136 | hydrogen sulfide | no |
122092 | 35581 | indole | no |
metabolite tests
@ref | Chebi-ID | metabolite | voges-proskauer-test | indole test | methylred-test |
---|---|---|---|---|---|
68368 | 15688 | acetoin | + | ||
68368 | 35581 | indole | - | ||
122092 | 15688 | acetoin | + | ||
122092 | 17234 | glucose | - |
enzymes
@ref | value | activity | ec |
---|---|---|---|
68382 | alpha-fucosidase | - | 3.2.1.51 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | N-acetyl-beta-glucosaminidase | + | 3.2.1.52 |
68382 | beta-glucosidase | + | 3.2.1.21 |
68382 | alpha-glucosidase | + | 3.2.1.20 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | beta-galactosidase | + | 3.2.1.23 |
68382 | alpha-galactosidase | - | 3.2.1.22 |
68382 | naphthol-AS-BI-phosphohydrolase | + | |
68382 | acid phosphatase | + | 3.1.3.2 |
68382 | alpha-chymotrypsin | - | 3.4.21.1 |
68382 | trypsin | + | 3.4.21.4 |
68382 | cystine arylamidase | - | 3.4.11.3 |
68382 | valine arylamidase | - | |
68382 | leucine arylamidase | + | 3.4.11.1 |
68382 | lipase (C 14) | - | |
68382 | esterase lipase (C 8) | - | |
68382 | esterase (C 4) | + | |
68382 | alkaline phosphatase | + | 3.1.3.1 |
68368 | cytochrome oxidase | - | 1.9.3.1 |
68368 | gelatinase | - | |
68368 | tryptophan deaminase | - | 4.1.99.1 |
68368 | urease | + | 3.5.1.5 |
68368 | ornithine decarboxylase | + | 4.1.1.17 |
68368 | lysine decarboxylase | + | 4.1.1.18 |
68368 | arginine dihydrolase | - | 3.5.3.6 |
68368 | beta-galactosidase | + | 3.2.1.23 |
122092 | oxidase | - | |
122092 | beta-galactosidase | + | 3.2.1.23 |
122092 | alcohol dehydrogenase | - | 1.1.1.1 |
122092 | gelatinase | - | |
122092 | amylase | - | |
122092 | caseinase | - | 3.4.21.50 |
122092 | catalase | + | 1.11.1.6 |
122092 | tween esterase | - | |
122092 | lecithinase | - | |
122092 | lipase | - | |
122092 | lysine decarboxylase | - | 4.1.1.18 |
122092 | ornithine decarboxylase | - | 4.1.1.17 |
122092 | phenylalanine ammonia-lyase | - | 4.3.1.24 |
122092 | protease | - | |
122092 | tryptophan deaminase | - | |
122092 | urease | + | 3.5.1.5 |
API zym
@ref | Control | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
122092 | - | + | + | - | - | + | - | - | + | - | + | + | - | + | - | + | + | + | - | - |
API 20E
@ref | ONPG | ADH Arg | LDC Lys | ODC | CIT | H2S | URE | TDA Trp | IND | VP | GEL | GLU | MAN | INO | Sor | RHA | SAC | MEL | AMY | ARA | OX |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
4547 | + | - | + | + | + | - | + | - | - | + | - | + | + | + | - | + | + | + | + | + | - |
4547 | + | - | + | + | - | - | + | - | - | + | - | + | + | + | - | + | + | + | + | + | - |
API 50CHac
@ref | GLY | ERY | DARA | LARA | RIB | DXYL | LXYL | ADO | MDX | GAL | GLU | FRU | MNE | SBE | RHA | DUL | INO | MAN | SOR | MDM | MDG | NAG | AMY | ARB | ESC | SAL | CEL | MAL | LAC | MEL | SAC | TRE | INU | MLZ | RAF | AMD | GLYG | XLT | GEN | TUR | LYX | TAG | DFUC | LFUC | DARL | LARL | GNT | 2KG | 5KG |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
122092 | + | - | - | + | + | +/- | - | - | - | + | + | + | + | - | + | - | + | + | - | - | - | + | - | + | + | + | + | + | - | +/- | + | + | - | - | +/- | - | - | - | + | - | - | + | +/- | - | + | - | - | + | + |
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent | sampling date | isolation date |
---|---|---|---|---|---|---|---|
4547 | spot on pear leaf | Yusung | Korea (north), Democratic People's Republic of | PRK | Asia | ||
58083 | Pear tree,brown leaf spot | Yusung | Republic of Korea | KOR | Asia | 1988 | |
122092 | Plant, Pear tree, brown leaf spot | Yusung | Republic of Korea | KOR | Asia | 1988 |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Host | #Plants | #Tree |
#Host Body-Site | #Plant | #Leaf (Phyllosphere) |
Safety information
risk assessment
@ref | pathogenicity plant | biosafety level | biosafety level comment |
---|---|---|---|
4547 | yes | 1 | Risk group (German classification) |
122092 | 2 | Risk group (French classification) |
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
4547 | Enterobacter pyrinus 16S rRNA gene tRNA-Glu gene and partial 23S rRNA gene | AJ010486 | 1929 | ena | 81476 |
4547 | Pluralibacter pyrinus partial 16S rRNA gene, type strain DSM12410T | LN875036 | 1535 | ena | 81476 |
External links
@ref: 4547
culture collection no.: DSM 12410, ATCC 49851, CDC G6570, CIP 104019, KCTC 2520, LMG 22970, CCUG 48320, CFBP 4168
straininfo link
- @ref: 73860
- straininfo: 42718
Reference
@id | authors | catalogue | doi/url | title |
---|---|---|---|---|
4547 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 12410) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-12410 | |
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
38163 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/15881 | ||
58083 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 48320) | https://www.ccug.se/strain?id=48320 | |
68368 | Automatically annotated from API 20E | |||
68371 | Automatically annotated from API 50CH acid | |||
68382 | Automatically annotated from API zym | |||
73860 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID42718.1 | StrainInfo: A central database for resolving microbial strain identifiers | |
122092 | Curators of the CIP | Collection of Institut Pasteur (CIP 104019) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20104019 |