Strain identifier
BacDive ID: 4363
Type strain:
Species: Enterobacter cloacae
Strain Designation: A-8
Strain history: <- CECT <- CIP <- R. Mercier, bioMérieux, La Balme-les-Grottes, France <- ATCC <- Dept. Medical Microbiol, Stanford Univ.
NCBI tax ID(s): 550 (species)
General
@ref: 18242
BacDive-ID: 4363
DSM-Number: 26481
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, motile, antibiotic resistance
description: Enterobacter cloacae A-8 is a mesophilic, motile bacterium that has multiple antibiotic resistances.
NCBI tax id
- NCBI tax id: 550
- Matching level: species
strain history
- @ref: 18242
- history: <- CECT <- CIP <- R. Mercier, bioMérieux, La Balme-les-Grottes, France <- ATCC <- Dept. Medical Microbiol, Stanford Univ.
doi: 10.13145/bacdive4363.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Enterobacterales
- family: Enterobacteriaceae
- genus: Enterobacter
- species: Enterobacter cloacae
- full scientific name: Enterobacter cloacae (Jordan 1890) Hormaeche and Edwards 1960 (Approved Lists 1980)
synonyms
@ref synonym 20215 Cloaca cloacae 20215 Bacillus cloacae 20215 Bacterium cloacae
@ref: 18242
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Enterobacteriales, not validated
family: Enterobacteriaceae
genus: Enterobacter
species: Enterobacter cloacae
full scientific name: Enterobacter cloacae (Jordan 1890) Hormaeche and Edwards 1960
strain designation: A-8
type strain: no
Morphology
cell morphology
@ref | motility | confidence | gram stain |
---|---|---|---|
69480 | yes | 97.133 | |
69480 | 99.976 | negative |
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
18242 | NUTRIENT AGAR (DSMZ Medium 1) | yes | https://mediadive.dsmz.de/medium/1 | Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water |
18242 | TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) | yes | https://mediadive.dsmz.de/medium/92 | Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water |
18242 | COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) | yes | https://mediadive.dsmz.de/medium/693 | Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
18242 | positive | growth | 28 | mesophilic |
18242 | positive | growth | 37 | mesophilic |
Physiology and metabolism
antibiogram
@ref | medium | incubation temperature | incubation time | oxygen condition | Penicillin G | oxacillin | ampicillin | ticarcillin | mezlocillin | cefalotin | cefazolin | cefotaxime | aztreonam | imipenem | tetracycline | chloramphenicol | gentamycin | amikacin | vancomycin | erythromycin | lincomycin | ofloxacin | norfloxacin | colistin | pipemidic acid | nitrofurantoin | bacitracin | polymyxin b | kanamycin | neomycin | doxycycline | ceftriaxone | clindamycin | fosfomycin | moxifloxacin | linezolid | nystatin | quinupristin/dalfopristin | teicoplanin | piperacillin/tazobactam |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
18242 | Mueller-Hinton Agar | 30 | 1 | aerob | 8 | 0 | 26 | 38-40 | 30 | 18 | 28 | 40 | 42 | 40 | 30 | 22-24 | 26 | 28 | 0 | 0 | 0 | 36 | 36 | 16-18 | 30 | 36 | 8 | 18 | 30 | 22 | 22-24 | 38 | 0 | 0 | 34 | 0 | 0 | 0 | 0 | 32-34 |
18242 | Mueller-Hinton Agar | 30 | aerob | 6 | 0 | 28-30 | 40 | 32 | 18 | 28 | 42 | 44-46 | 40-42 | 32 | 30-32 | 26 | 28 | 6 | 6-8 | 0 | 40 | 40 | 16 | 32 | 36 | 0 | 18-20 | 28-30 | 22 | 26 | 40-42 | 0 | 0 | 38-40 | 6-8 | 0 | 0 | 0 | 34 |
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | no | 100 |
69480 | no | 99.901 |
compound production
@ref | compound |
---|---|
18242 | cephalosporinase |
18242 | beta lactamase |
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
68368 | 30849 | L-arabinose | + | fermentation |
68368 | 27613 | amygdalin | + | fermentation |
68368 | 28053 | melibiose | + | fermentation |
68368 | 17992 | sucrose | + | fermentation |
68368 | 62345 | L-rhamnose | + | fermentation |
68368 | 30911 | sorbitol | + | fermentation |
68368 | 17268 | myo-inositol | + | fermentation |
68368 | 16899 | D-mannitol | + | fermentation |
68368 | 17634 | D-glucose | + | fermentation |
68368 | 5291 | gelatin | - | hydrolysis |
68368 | 27897 | tryptophan | - | energy source |
68368 | 16199 | urea | - | hydrolysis |
68368 | 16947 | citrate | + | assimilation |
68368 | 18257 | ornithine | + | degradation |
68368 | 25094 | lysine | - | degradation |
68368 | 29016 | arginine | + | hydrolysis |
68374 | 18257 | ornithine | + | degradation |
68374 | 29016 | arginine | + | hydrolysis |
68374 | 25094 | lysine | - | degradation |
68374 | 16199 | urea | - | hydrolysis |
68374 | 18403 | L-arabitol | - | builds acid from |
68374 | 18024 | D-galacturonic acid | - | builds acid from |
68374 | Potassium 5-ketogluconate | - | builds acid from | |
68374 | 16899 | D-mannitol | - | builds acid from |
68374 | 17306 | maltose | + | builds acid from |
68374 | 15963 | ribitol | - | builds acid from |
68374 | 18394 | palatinose | - | builds acid from |
68374 | 15792 | malonate | + | assimilation |
68374 | 27897 | tryptophan | - | energy source |
68374 | 17634 | D-glucose | + | builds acid from |
68374 | 17992 | sucrose | - | builds acid from |
68374 | 30849 | L-arabinose | - | builds acid from |
68374 | 18333 | D-arabitol | - | builds acid from |
68374 | 27082 | trehalose | + | builds acid from |
68374 | 62345 | L-rhamnose | + | builds acid from |
68374 | 17268 | myo-inositol | + | builds acid from |
68374 | 17057 | cellobiose | + | builds acid from |
68374 | 30911 | sorbitol | - | builds acid from |
metabolite production
@ref | Chebi-ID | metabolite | production |
---|---|---|---|
68374 | 35581 | indole | no |
68368 | 15688 | acetoin | no |
68368 | 35581 | indole | no |
68368 | 16136 | hydrogen sulfide | no |
metabolite tests
@ref | Chebi-ID | metabolite | indole test | voges-proskauer-test |
---|---|---|---|---|
68374 | 35581 | indole | - | |
68368 | 15688 | acetoin | - | |
68368 | 35581 | indole | - |
enzymes
@ref | value | activity | ec |
---|---|---|---|
68374 | L-aspartate arylamidase | - | 3.4.11.21 |
68374 | alpha-maltosidase | - | |
68374 | alpha-galactosidase | + | 3.2.1.22 |
68374 | alpha-glucosidase | - | 3.2.1.20 |
68374 | beta-galactosidase | + | 3.2.1.23 |
68374 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68374 | beta-glucuronidase | - | 3.2.1.31 |
68374 | beta-glucosidase | + | 3.2.1.21 |
68374 | lipase | - | |
68374 | urease | - | 3.5.1.5 |
68374 | lysine decarboxylase | - | 4.1.1.18 |
68374 | arginine dihydrolase | + | 3.5.3.6 |
68374 | ornithine decarboxylase | + | 4.1.1.17 |
68368 | cytochrome oxidase | - | 1.9.3.1 |
68368 | gelatinase | - | |
68368 | tryptophan deaminase | - | 4.1.99.1 |
68368 | urease | - | 3.5.1.5 |
68368 | ornithine decarboxylase | + | 4.1.1.17 |
68368 | lysine decarboxylase | - | 4.1.1.18 |
68368 | arginine dihydrolase | + | 3.5.3.6 |
68368 | beta-galactosidase | + | 3.2.1.23 |
API 20E
@ref | ONPG | ADH Arg | LDC Lys | ODC | CIT | H2S | URE | TDA Trp | IND | VP | GEL | GLU | MAN | INO | Sor | RHA | SAC | MEL | AMY | ARA | OX |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
18242 | + | + | - | + | + | - | - | - | - | - | - | + | + | + | + | + | + | + | + | + | - |
API ID32E
@ref | ODC | ADH Arg | LDC Lys | URE | LARL | GAT | 5KG | LIP | RP | beta GLU | MAN | MAL | ADO | PLE | beta GUR | MNT | IND | beta NAG | beta GAL | GLU | SAC | LARA | DARL | alpha GLU | alpha GAL | TRE | RHA | INO | CEL | SOR | alphaMAL | AspA |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
51730 | + | + | - | - | - | - | - | - | - | + | - | + | - | - | - | + | - | - | + | + | - | - | - | - | + | + | + | + | + | - | - | - |
Isolation, sampling and environmental information
isolation
- @ref: 18242
- country: USA
- origin.country: USA
- continent: North America
taxonmaps
- @ref: 69479
- File name: preview.99_120.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_6;96_7;97_7;98_17;99_120&stattab=map
- Last taxonomy: Enterobacteriaceae
- 16S sequence: KF516238
- Sequence Identity:
- Total samples: 13334
- soil counts: 615
- aquatic counts: 1353
- animal counts: 10132
- plant counts: 1234
Safety information
risk assessment
- @ref: 18242
- biosafety level: 2
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 20218
- description: Enterobacter cloacae subsp. cloacae strain ATCC 23355 16S ribosomal RNA gene, partial sequence
- accession: KF516238
- length: 1347
- database: ena
- NCBI tax ID: 336306
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Enterobacter cloacae strain DSM 26481 | 550.2783 | complete | patric | 550 |
66792 | Enterobacter cloacae DSM 26481 | GCA_013375935 | chromosome | ncbi | 550 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 100 | no |
gram-positive | no | 97.822 | no |
anaerobic | no | 96.404 | no |
halophile | no | 84.237 | no |
spore-forming | no | 91.908 | no |
glucose-util | yes | 95.304 | no |
thermophile | no | 99.237 | yes |
aerobic | yes | 81.312 | no |
motile | yes | 89.15 | no |
flagellated | no | 64.522 | no |
glucose-ferment | yes | 93.998 | yes |
External links
@ref: 18242
culture collection no.: DSM 26481, ATCC 23355, CCUG 33777, CECT 5075, CIP 103550, WDCM 00082
straininfo link
- @ref: 73854
- straininfo: 38005
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Enzymology | 1955391 | Localization of cephalosporinase in Enterobacter cloacae by immunocytochemical examination. | Ishii Y, Ichikawa M, Yamaguchi K, Takano K, Inoue M | J Antibiot (Tokyo) | 10.7164/antibiotics.44.1088 | 1991 | Anti-Bacterial Agents/pharmacology, Blotting, Western, Cefoxitin/*pharmacology, Cephalosporinase/*analysis/biosynthesis, Drug Resistance, Microbial/physiology, Enterobacter cloacae/chemistry/drug effects/*enzymology/ultrastructure, Enzyme Induction, Immunohistochemistry, Microbial Sensitivity Tests, Microscopy, Immunoelectron | Pathogenicity |
Enzymology | 6378089 | Novel method for studying the public health significance of macroinvertebrates occurring in potable water. | Levy RV, Cheetham RD, Davis J, Winer G, Hart FL | Appl Environ Microbiol | 10.1128/aem.47.5.889-894.1984 | 1984 | Adsorption, Animals, *Chlorine, Crustacea/*microbiology, *Disinfectants, Enterobacter/physiology, *Enterobacteriaceae/physiology, Escherichia coli/physiology, Kinetics, Public Health, *Water Microbiology, Water Pollution, *Water Supply | |
Pathogenicity | 8843303 | Comparison of three different in vitro methods of detecting synergy: time-kill, checkerboard, and E test. | White RL, Burgess DS, Manduru M, Bosso JA | Antimicrob Agents Chemother | 10.1128/AAC.40.8.1914 | 1996 | Bacteria/*drug effects, Cefepime, Ceftazidime/pharmacology, Cephalosporins/pharmacology, Ciprofloxacin/pharmacology, *Drug Synergism, Drug Therapy, Combination/*pharmacology, Enterobacter cloacae/drug effects, Escherichia coli/drug effects, Microbial Sensitivity Tests/*methods, Pseudomonas aeruginosa/drug effects, Staphylococcus aureus/drug effects, Tobramycin/pharmacology | |
Enzymology | 17258829 | Bioassay for determination of fosmidomycin in plasma and urine: application for pharmacokinetic dose optimisation. | Cheoymang A, Hudchinton D, Kioy D, Na-Bangchang K | J Microbiol Methods | 10.1016/j.mimet.2006.11.018 | 2007 | Anti-Bacterial Agents/pharmacology, Antimalarials/blood/*pharmacokinetics/urine, Biological Assay/*methods, Calibration, Clindamycin/blood/pharmacokinetics/urine, Dose-Response Relationship, Drug, Enterobacter cloacae/drug effects/metabolism, Fosfomycin/*analogs & derivatives/blood/pharmacokinetics/urine, Humans, Reproducibility of Results, Sensitivity and Specificity | Pathogenicity |
Pathogenicity | 20188200 | A high-throughput colorimetric-based bioassay method for determination of fosmidomycin in plasma and urine and application for pharmacokinetic study. | Cheoymang A, Na-Bangchang K | J Pharmacol Toxicol Methods | 10.1016/j.vascn.2010.02.012 | 2010 | Biological Assay/*methods, Colorimetry/methods, Enterobacter cloacae/drug effects, Fosfomycin/*analogs & derivatives/blood/pharmacokinetics/urine, Humans, Malaria, Falciparum/blood/urine | Enzymology |
Pathogenicity | 27930849 | Searching for a potential antibacterial lead structure against bacterial biofilms among new naphthoquinone compounds. | Moreira CS, Silva AC, Novais JS, Sa Figueiredo AM, Ferreira VF, da Rocha DR, Castro HC | J Appl Microbiol | 10.1111/jam.13369 | 2017 | Anti-Bacterial Agents/*pharmacology, Biofilms/*drug effects, Enterobacter cloacae, Enterococcus faecalis/drug effects, Escherichia coli/drug effects, Gram-Positive Bacteria/drug effects, Humans, Klebsiella pneumoniae/drug effects, Methicillin-Resistant Staphylococcus aureus/*drug effects, Microbial Sensitivity Tests, Naphthoquinones/chemistry/*pharmacology, Proteus mirabilis/drug effects, Pseudomonas aeruginosa/drug effects, Staphylococcus/drug effects, Vancomycin | |
Pathogenicity | 29550501 | Antibacterial naphthoquinone derivatives targeting resistant strain Gram-negative bacteria in biofilms. | Novais JS, Moreira CS, Silva ACJA, Loureiro RS, Sa Figueiredo AM, Ferreira VF, Castro HC, da Rocha DR | Microb Pathog | 10.1016/j.micpath.2018.03.024 | 2018 | Anti-Bacterial Agents/chemical synthesis/chemistry/*pharmacology/toxicity, Biofilms/*drug effects, Ciprofloxacin/pharmacology, Erythrocytes/drug effects, Gram-Negative Bacteria/*drug effects, Gram-Positive Bacteria/drug effects, Humans, Materials Testing, Microbial Sensitivity Tests, Naphthoquinones/chemical synthesis/chemistry/*pharmacology/toxicity | |
30732006 | First Report of Enterobacter Bulb Decay of Onions Caused by Enterobacter cloacae in New York. | Zaid AM, Bonasera JM, Beer SV | Plant Dis | 10.1094/PDIS-05-11-0375 | 2011 | |||
30764199 | First Report of Enterobacter cloacae Causing Onion Bulb Rot in the Columbia Basin of Washington State. | Schroeder BK, du Toit LJ, Schwartz HF | Plant Dis | 10.1094/PDIS-93-3-0323A | 2009 | |||
35255107 | Antibacterial activities of two potential peptides extracted from Polistes wattii Cameron, 1900 (Vespidae: Polistinae) wasp venom collected at Eastern Province, Saudi Arabia. | A Al-Shammery K, Hozzein WN | PLoS One | 10.1371/journal.pone.0264035 | 2022 | Animals, Anti-Bacterial Agents/pharmacology, Bacteria, Microbial Sensitivity Tests, Peptides/pharmacology, Saudi Arabia, *Staphylococcal Infections, Staphylococcus aureus, Wasp Venoms/chemistry/pharmacology, *Wasps |
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
18242 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 26481) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-26481 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
51730 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 33777) | https://www.ccug.se/strain?id=33777 | |||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
68368 | Automatically annotated from API 20E | |||||
68374 | Automatically annotated from API ID32E | |||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
73854 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID38005.1 | StrainInfo: A central database for resolving microbial strain identifiers |