Strain identifier
BacDive ID: 4347
Type strain: 
Species: Dickeya chrysanthemi
Strain Designation: EC 16
Strain history: <- ATCC <- W.H. Burkholder, EC 16
NCBI tax ID(s): 556 (species)
version 8.1 (current version)
General
@ref: 9182
BacDive-ID: 4347
DSM-Number: 30177
keywords: genome sequence, Bacteria, mesophilic, motile, plant pathogen
description: Dickeya chrysanthemi EC 16 is a mesophilic, motile plant pathogen of the family Pectobacteriaceae.
NCBI tax id
- NCBI tax id: 556
- Matching level: species
strain history
- @ref: 9182
- history: <- ATCC <- W.H. Burkholder, EC 16
doi: 10.13145/bacdive4347.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Enterobacterales
- family: Pectobacteriaceae
- genus: Dickeya
- species: Dickeya chrysanthemi
- full scientific name: Dickeya chrysanthemi (Burkholder et al. 1953) Samson et al. 2005
synonyms
@ref synonym 20215 Pectobacterium chrysanthemi 20215 Erwinia chrysanthemi
@ref: 9182
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Enterobacteriales, not validated
family: Pectobacteriaceae
genus: Dickeya
species: Dickeya chrysanthemi
full scientific name: Dickeya chrysanthemi (Burkholder et al. 1953) Samson et al. 2005
strain designation: EC 16
type strain: no
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | yes | 98.254 | |
| 69480 | 99.985 | negative |
Culture and growth conditions
culture medium
- @ref: 9182
- name: REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1a
- composition: Name: REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
culture temp
- @ref: 9182
- growth: positive
- type: growth
- temperature: 26
- range: mesophilic
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 100 |
| 69480 | no | 99.899 |
Safety information
risk assessment
- @ref: 9182
- pathogenicity plant: yes
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
Genome sequences
- @ref: 66792
- description: Dickeya chrysanthemi strain EC16
- accession: 556.32
- assembly level: wgs
- database: patric
- NCBI tax ID: 556
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| gram-positive | no | 98.33 | no |
| anaerobic | no | 96.915 | no |
| halophile | no | 92.939 | no |
| spore-forming | no | 93.566 | no |
| glucose-util | yes | 93.814 | no |
| thermophile | no | 99.374 | yes |
| aerobic | yes | 53.822 | no |
| motile | yes | 90.944 | no |
| flagellated | no | 54.523 | no |
| glucose-ferment | yes | 91.189 | no |
External links
@ref: 9182
culture collection no.: DSM 30177, ATCC 11662
straininfo link
- @ref: 73838
- straininfo: 35407
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Metabolism | 4591473 | Genetic transfer of episomic elements among Erwinia species and other enterobacteria: F'Lac+. | Chatterjee AK, Starr MP | J Bacteriol | 10.1128/jb.111.1.169-176.1972 | 1972 | Acridines/pharmacology, *Conjugation, Genetic, DNA, Bacterial, Drug Resistance, Microbial, Erwinia/*metabolism, Escherichia coli/*metabolism, *Genes, Lactose/*metabolism, Mutation, Shigella dysenteriae/drug effects/*metabolism, Species Specificity, Streptomycin/pharmacology, Ultraviolet Rays | Phylogeny |
| Enzymology | 10849785 | Fermentations of pectin-rich biomass with recombinant bacteria to produce fuel ethanol. | Doran JB, Cripe J, Sutton M, Foster B | Appl Biochem Biotechnol | 10.1385/abab:84-86:1-9:141 | 2000 | Alcohol Dehydrogenase/genetics/*metabolism, *Biomass, Dickeya chrysanthemi/genetics/*physiology, Escherichia coli/genetics/*physiology, *Ethanol, Fermentation, Hexuronic Acids/metabolism, Kinetics, Klebsiella/genetics/*physiology, *Pectins, Pyruvate Decarboxylase/genetics/*metabolism, Recombination, Genetic | Metabolism |
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 9182 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 30177) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-30177 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |
| 73838 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID35407.1 | StrainInfo: A central database for resolving microbial strain identifiers |