Strain identifier
BacDive ID: 4325
Type strain:
Species: Citrobacter freundii
Strain history: CIP <- 1957, NCTC <- 1953, ATCC <- C.H. Werkman, strain Br (Braak)
NCBI tax ID(s): 1006003 (strain), 546 (species)
General
@ref: 9097
BacDive-ID: 4325
DSM-Number: 30039
keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, motile, antibiotic resistance
description: Citrobacter freundii DSM 30039 is an aerobe, mesophilic, motile bacterium that has multiple antibiotic resistances and was isolated from water of a canal.
NCBI tax id
NCBI tax id | Matching level |
---|---|
546 | species |
1006003 | strain |
strain history
@ref | history |
---|---|
9097 | <- ATCC; ATCC 8090 <- C. H. Werkman; |
67770 | R. Sakazaki 96 <-- ATCC 8090 <-- C. H. Werkman. |
119459 | CIP <- 1957, NCTC <- 1953, ATCC <- C.H. Werkman, strain Br (Braak) |
doi: 10.13145/bacdive4325.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Enterobacterales
- family: Enterobacteriaceae
- genus: Citrobacter
- species: Citrobacter freundii
- full scientific name: Citrobacter freundii (Braak 1928) Werkman and Gillen 1932 (Approved Lists 1980)
synonyms
@ref synonym 20215 Bethesda ballerupensis 20215 Bacterium freundii
@ref: 9097
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Enterobacteriales, not validated
family: Enterobacteriaceae
genus: Citrobacter
species: Citrobacter freundii
full scientific name: Citrobacter freundii (Braak 1928) Werkman and Gillen 1932
type strain: yes
Morphology
cell morphology
@ref | motility | confidence | gram stain | cell shape |
---|---|---|---|---|
69480 | yes | 95.498 | ||
69480 | 99.979 | negative | ||
119459 | yes | negative | rod-shaped |
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
9097 | COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) | yes | https://mediadive.dsmz.de/medium/693 | Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base |
9097 | TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) | yes | https://mediadive.dsmz.de/medium/92 | Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water |
42192 | MEDIUM 72- for trypto casein soja agar | yes | Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g) | |
119459 | CIP Medium 72 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
9097 | positive | growth | 30 | mesophilic |
42192 | positive | growth | 30 | mesophilic |
44198 | positive | growth | 37 | mesophilic |
67770 | positive | growth | 37 | mesophilic |
119459 | positive | growth | 10-41 | |
119459 | no | growth | 5 | psychrophilic |
Physiology and metabolism
oxygen tolerance
@ref | oxygen tolerance |
---|---|
44198 | aerobe |
119459 | facultative anaerobe |
antibiogram
@ref | medium | Penicillin G | oxacillin | ampicillin | ticarcillin | mezlocillin | cefalotin | cefazolin | cefotaxime | aztreonam | imipenem | tetracycline | chloramphenicol | gentamycin | amikacin | vancomycin | erythromycin | lincomycin | ofloxacin | norfloxacin | colistin | pipemidic acid | nitrofurantoin | bacitracin | polymyxin b | kanamycin | neomycin | doxycycline | ceftriaxone | clindamycin | fosfomycin | moxifloxacin | linezolid | nystatin | quinupristin/dalfopristin | teicoplanin | piperacillin/tazobactam | incubation temperature | oxygen condition |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
9097 | Mueller-Hinton Agar | 0 | 0 | 16 | 36 | 26 | 14 | 20-22 | 38 | 42 | 34 | 28-30 | 30 | 24 | 26 | 0 | 8 | 0 | 38 | 40 | 14 | 30 | 22-24 | 0 | 14-16 | 36 | 20 | 22 | 36 | 0 | 38 | 34 | 0 | 0 | 0 | 0 | 32 | ||
9097 | M 92 | 0 | 0 | 16 | 38 | 26 | 14 | 20 | 38 | 42 | 32 | 32 | 32 | 24 | 26-28 | 10 | 8 | 0 | 34 | 40 | 14-16 | 30 | 26 | 0 | 16 | 26 | 20 | 22-24 | 36 | 10-12 | 40 | 32 | 0 | 0 | 0 | 0 | 32 | 37 | aerob |
9097 | M 92 | 0 | 0 | 16 | 38 | 26 | 14 | 20 | 38 | 42 | 32 | 32 | 32 | 24 | 26-28 | 10 | 8 | 0 | 34 | 40 | 14-16 | 30 | 26 | 0 | 16 | 26 | 20 | 22-24 | 36 | 10-12 | 40 | 32 | 0 | 0 | 0 | 0 | 32 | 37 | aerob |
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | no | 100 |
69480 | no | 99.852 |
119459 | no |
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
68368 | 30849 | L-arabinose | + | fermentation |
68368 | 27613 | amygdalin | + | fermentation |
68368 | 17992 | sucrose | + | fermentation |
68368 | 62345 | L-rhamnose | + | fermentation |
68368 | 30911 | sorbitol | + | fermentation |
68368 | 16899 | D-mannitol | + | fermentation |
68368 | 17634 | D-glucose | + | fermentation |
68368 | 5291 | gelatin | - | hydrolysis |
68368 | 27897 | tryptophan | - | energy source |
68368 | 16199 | urea | - | hydrolysis |
68368 | 18257 | ornithine | - | degradation |
68368 | 25094 | lysine | - | degradation |
119459 | 29864 | mannitol | + | fermentation |
119459 | 16947 | citrate | + | carbon source |
119459 | 17234 | glucose | + | fermentation |
119459 | 17716 | lactose | + | fermentation |
119459 | 17632 | nitrate | + | reduction |
119459 | 16301 | nitrite | + | reduction |
119459 | 15792 | malonate | - | assimilation |
119459 | 132112 | sodium thiosulfate | + | builds gas from |
119459 | 17234 | glucose | + | degradation |
metabolite production
@ref | Chebi-ID | metabolite | production |
---|---|---|---|
68368 | 35581 | indole | no |
68368 | 16136 | hydrogen sulfide | yes |
119459 | 35581 | indole | no |
metabolite tests
@ref | Chebi-ID | metabolite | indole test | voges-proskauer-test | methylred-test |
---|---|---|---|---|---|
68368 | 35581 | indole | - | ||
119459 | 15688 | acetoin | - | ||
119459 | 17234 | glucose | + |
enzymes
@ref | value | activity | ec |
---|---|---|---|
68382 | alpha-fucosidase | - | 3.2.1.51 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68382 | beta-glucosidase | - | 3.2.1.21 |
68382 | alpha-glucosidase | + | 3.2.1.20 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | beta-galactosidase | + | 3.2.1.23 |
68382 | alpha-galactosidase | - | 3.2.1.22 |
68382 | naphthol-AS-BI-phosphohydrolase | + | |
68382 | acid phosphatase | + | 3.1.3.2 |
68382 | alpha-chymotrypsin | - | 3.4.21.1 |
68382 | trypsin | - | 3.4.21.4 |
68382 | cystine arylamidase | - | 3.4.11.3 |
68382 | valine arylamidase | - | |
68382 | leucine arylamidase | + | 3.4.11.1 |
68382 | lipase (C 14) | - | |
68382 | esterase lipase (C 8) | - | |
68382 | esterase (C 4) | + | |
68382 | alkaline phosphatase | + | 3.1.3.1 |
68368 | cytochrome oxidase | - | 1.9.3.1 |
68368 | gelatinase | - | |
68368 | tryptophan deaminase | - | 4.1.99.1 |
68368 | urease | - | 3.5.1.5 |
68368 | ornithine decarboxylase | - | 4.1.1.17 |
68368 | lysine decarboxylase | - | 4.1.1.18 |
68368 | beta-galactosidase | + | 3.2.1.23 |
119459 | oxidase | - | |
119459 | beta-galactosidase | + | 3.2.1.23 |
119459 | alcohol dehydrogenase | - | 1.1.1.1 |
119459 | gelatinase | - | |
119459 | catalase | + | 1.11.1.6 |
119459 | lysine decarboxylase | - | 4.1.1.18 |
119459 | ornithine decarboxylase | - | 4.1.1.17 |
119459 | tryptophan deaminase | - | |
119459 | urease | - | 3.5.1.5 |
API zym
@ref | Control | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
119459 | - | + | + | - | - | + | - | - | - | - | + | + | - | + | - | + | - | - | - | - |
API 20E
@ref | ONPG | ADH Arg | LDC Lys | ODC | CIT | H2S | URE | TDA Trp | IND | VP | GEL | GLU | MAN | INO | Sor | RHA | SAC | MEL | AMY | ARA | OX |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
9097 | + | + | - | - | + | + | - | - | - | +/- | - | + | + | + | + | + | + | - | + | + | - |
9097 | + | + | - | - | + | + | - | - | - | - | - | + | + | + | + | + | + | + | + | + | - |
9097 | + | + | - | - | + | + | - | - | - | - | - | + | + | + | + | + | + | + | + | + | - |
9097 | + | - | - | - | - | + | - | - | - | - | - | + | + | - | + | + | + | - | + | + | - |
API biotype100
@ref | GLU | FRU | GAL | TRE | MNE | SBE | MEL | SAC | RAF | MTE | MAL | LAC | LTE | MbGa | MaGa | CEL | GEN | MbGu | ESC | RIB | ARA | XYL | PLE | RHA | FUC | MLZ | DARL | LARL | XLT | DUL | TAG | GLY | INO | MAN | MTL | TUR | SOR | ADO | HBG | LYX | ERY | MDG | 3MDG | SAT | MUC | LTAT | DTAT | MTAT | DMLT | LMLT | CATE | TATE | TTE | CIT | GRT | GAT | 2KG | 5KG | TRY | NAG | GNT | PAC | PAT | pOBE | QAT | GTE | mOBE | BAT | PPAT | CMT | TGE | BET | PCE | ABT | HIN | LAT | CAP | CYT | HIS | SUC | FUM | GRE | GYT | AVT | ETN | TTN | GLN | ITA | 3OBU | APT | GTT | PRO | DALA | LALA | SER | MNT | PROP | TYR | 2KT |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
119459 | + | + | + | + | + | + | + | + | + | + | + | + | - | + | - | + | + | + | - | + | + | + | + | + | + | - | - | - | - | - | - | + | + | + | + | - | + | - | - | + | - | + | + | + | + | + | - | - | + | + | + | - | + | + | + | + | + | + | - | + | + | - | - | - | - | + | + | - | + | + | - | - | - | - | - | + | - | - | - | + | + | - | + | + | + | - | + | - | + | + | + | + | + | + | + | - | + | + | - |
Isolation, sampling and environmental information
isolation
@ref | sample type |
---|---|
9097 | water of a canal |
119459 | Environment, Water (channel) |
taxonmaps
- @ref: 69479
- File name: preview.99_644.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_6;96_7;97_7;98_17;99_644&stattab=map
- Last taxonomy: Citrobacter
- 16S sequence: AB626119
- Sequence Identity:
- Total samples: 66090
- soil counts: 3252
- aquatic counts: 7413
- animal counts: 52478
- plant counts: 2947
Safety information
risk assessment
@ref | biosafety level | biosafety level comment |
---|---|---|
9097 | 2 | Risk group (German classification) |
119459 | 1 | Risk group (French classification) |
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | Citrobacter freundii strain ATCC 8090 16S ribosomal RNA gene, partial sequence | FJ971857 | 797 | ena | 1006003 |
20218 | Citrobacter freundii partial 16S rRNA gene, strain ATCC 8090 | FM207096 | 390 | ena | 1006003 |
20218 | Citrobacter freundii gene for 16S rRNA, partial sequence, strain: JCM 1657 | AB626119 | 1464 | ena | 546 |
20218 | Citrobacter freundii partial 16S rRNA gene, strain LMG 3246 | HG798906 | 1427 | ena | 546 |
20218 | Citrobacter freundii gene for 16S rRNA, partial sequence, strain: NBRC 12681 | AB680314 | 1467 | ena | 546 |
20218 | Citrobacter freundii gene for 16S ribosomal RNA, partial sequence, strain: NBRC 12681 | AB741688 | 1324 | ena | 546 |
9097 | Citrobacter freundii 16S rRNA gene (strain DSM 30039) | AJ233408 | 1505 | ena | 1006003 |
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Citrobacter freundii ATCC 8090 = MTCC 1658 = NBRC 12681 | GCA_011064845 | complete | ncbi | 1006003 |
66792 | Citrobacter freundii ATCC 8090 = MTCC 1658 = NBRC 12681 | GCA_000759735 | contig | ncbi | 1006003 |
66792 | Citrobacter freundii ATCC 8090 = MTCC 1658 = NBRC 12681 | GCA_000734905 | contig | ncbi | 1006003 |
66792 | Citrobacter freundii NCTC9750 | GCA_900635425 | complete | ncbi | 546 |
66792 | Citrobacter freundii ATCC 8090 = MTCC 1658 | 1006003.7 | wgs | patric | 1006003 |
66792 | Citrobacter freundii ATCC 8090 = MTCC 1658 | 1006003.3 | wgs | patric | 1006003 |
66792 | Citrobacter freundii ATCC 8090 = MTCC 1658 = NBRC 12681 | 1006003.13 | complete | patric | 1006003 |
66792 | Citrobacter freundii NBRC 12681 | 1114920.3 | wgs | patric | 1006003 |
66792 | Citrobacter freundii strain NCTC9750 | 546.494 | complete | patric | 546 |
66792 | Citrobacter freundii NBRC 12681 | 2600255012 | draft | img | 1114920 |
66792 | Citrobacter freundii ATCC 8090 | 2519899575 | draft | img | 1006003 |
66792 | Citrobacter freundii ATCC 8090 | 2588253794 | draft | img | 1006003 |
67770 | Citrobacter freundii ATCC 8090 = MTCC 1658 = NBRC 12681 | GCA_000312465 | contig | ncbi | 1006003 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 100 | no |
motile | yes | 89.345 | no |
flagellated | yes | 53.315 | no |
gram-positive | no | 98.421 | no |
anaerobic | no | 95.228 | yes |
aerobic | yes | 81.906 | no |
halophile | no | 91.889 | no |
spore-forming | no | 93.051 | no |
thermophile | no | 99.48 | no |
glucose-util | yes | 93.687 | no |
glucose-ferment | yes | 93.838 | yes |
External links
@ref: 9097
culture collection no.: DSM 30039, ATCC 8090, IFO 12681, NBRC 12681, NCTC 9750, CCUG 418, ATCC 13316, JCM 1657, CECT 401, CIP 57.32, IAM 12471, KCTC 2509, LMG 3246, LMG 3247, MTCC 1658, NCIMB 11490, NRRL B-2643, Br (Braak)
straininfo link
- @ref: 73817
- straininfo: 1750
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Enzymology | 1369091 | Characterization of membrane-bound spermidine dehydrogenase of Citrobacter freundii. | Hisano T, Murata K, Kimura A, Matsushita K, Toyama H, Adachi O | Biosci Biotechnol Biochem | 10.1271/bbb.56.1916 | 1992 | Amino Acids/analysis, Cell Fractionation/methods, Cell Membrane/enzymology, Chromatography, DEAE-Cellulose/methods, Chromatography, Gel/methods, Citrobacter freundii/*enzymology, Cytosol/enzymology, Detergents, Electrophoresis, Polyacrylamide Gel/methods, Isoenzymes/isolation & purification/*metabolism, Kinetics, Octoxynol, Oxidoreductases Acting on CH-NH Group Donors/isolation & purification/*metabolism, Polyethylene Glycols | Phylogeny |
Metabolism | 3941048 | Conservation of DNA sequences for plasmid-mediated citrate utilization within the enterobacteria. | Hirato T, Ishiguro N, Shinagawa M, Sato G | J Bacteriol | 10.1128/jb.165.1.324-327.1986 | 1986 | *Base Sequence, Citrates/*metabolism, Citric Acid, DNA, Bacterial/*analysis, Enterobacteriaceae/*genetics/metabolism, Plasmids, *Sequence Homology, Nucleic Acid | |
Pathogenicity | 18708273 | Synthesis, characterization and antibacterial activity of some triazole Mannich bases carrying diphenylsulfone moieties. | Almajan GL, Barbuceanu SF, Almajan ER, Draghici C, Saramet G | Eur J Med Chem | 10.1016/j.ejmech.2008.07.003 | 2008 | Anti-Bacterial Agents/*chemical synthesis/chemistry/*pharmacology, Bacteria/*drug effects, Mannich Bases/*chemistry, Microbial Sensitivity Tests, Sulfones/*chemistry, Triazoles/*chemical synthesis/chemistry/*pharmacology | |
Pathogenicity | 19616347 | Synthesis, characterization and evaluation of antibacterial activity of some thiazolo[3,2-b][1,2,4]triazole incorporating diphenylsulfone moieties. | Barbuceanu SF, Almajan GL, Saramet I, Draghici C, Tarcomnicu AI, Bancescu G | Eur J Med Chem | 10.1016/j.ejmech.2009.06.021 | 2009 | Anti-Bacterial Agents/*chemistry/*pharmacology, Bacteria/drug effects, Biphenyl Compounds/chemistry/pharmacology, Microbial Sensitivity Tests, Molecular Structure, Structure-Activity Relationship, Sulfones/*chemistry/*pharmacology, Triazoles/*chemistry/*pharmacology | |
19702172 | Comparative study of anthocyanin composition, antimicrobial and antioxidant activity in bilberry (Vaccinium myrtillus L.) and blueberry (Vaccinium corymbosum L.) fruits. | Burdulis D, Sarkinas A, Jasutiene I, Stackevicene E, Nikolajevas L, Janulis V | Acta Pol Pharm | 2009 | Anthocyanins/*analysis, Anti-Infective Agents/*pharmacology, Antioxidants/*pharmacology, Blueberry Plants/*chemistry, Chromatography, High Pressure Liquid, Fruit/*chemistry, Microbial Sensitivity Tests | |||
Genetics | 23405287 | Draft Genome Sequence of the Type Species of the Genus Citrobacter, Citrobacter freundii MTCC 1658. | Kumar S, Kaur C, Kimura K, Takeo M, Raghava GP, Mayilraj S | Genome Announc | 10.1128/genomeA.00120-12 | 2013 | ||
Pathogenicity | 23529729 | Characterization of qnrB-like genes in Citrobacter species of the American Type Culture Collection. | Saga T, Sabtcheva S, Mitsutake K, Ishii Y, Tateda K, Yamaguchi K, Kaku M | Antimicrob Agents Chemother | 10.1128/AAC.02396-12 | 2013 | Anti-Bacterial Agents/*pharmacology, Bacterial Proteins/genetics, Citrobacter/*classification/*drug effects/genetics, Drug Resistance, Bacterial/*genetics, *Genes, Bacterial, Humans, Molecular Sequence Data, Plasmids/genetics, Quinolones/*pharmacology, Sequence Analysis, DNA | Genetics |
Metabolism | 25644946 | 1,3-Propanediol production by new recombinant Escherichia coli containing genes from pathogenic bacteria. | Przystalowska H, Zeyland J, Szymanowska-Powalowska D, Szalata M, Slomski R, Lipinski D | Microbiol Res | 10.1016/j.micres.2014.12.007 | 2014 | Bioreactors, Catalysis, Escherichia coli/*genetics/*metabolism, Fermentation, Gene Expression, *Genes, Bacterial, Hydro-Lyases/genetics/metabolism, Metabolic Networks and Pathways, Plasmids/genetics, Propylene Glycols/*metabolism, Recombinant Proteins/genetics/isolation & purification/metabolism | Biotechnology |
Phylogeny | 28857032 | Citrobacter portucalensis sp. nov., isolated from an aquatic sample. | Ribeiro TG, Goncalves BR, da Silva MS, Novais A, Machado E, Carrico JA, Peixe L | Int J Syst Evol Microbiol | 10.1099/ijsem.0.002154 | 2017 | Bacterial Typing Techniques, Base Composition, Citrobacter/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, Genes, Bacterial, Multilocus Sequence Typing, *Phylogeny, Portugal, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Water Microbiology, *Water Wells | Transcriptome |
34036979 | 3D printed imaging platform for portable cell counting. | Awate DM, Pola CC, Shumaker E, Gomes CL, Juarez JJ | Analyst | 10.1039/d1an00778e | 2021 | *Algorithms, Flow Cytometry, Microscopy, Fluorescence, *Printing, Three-Dimensional | ||
Phylogeny | 34037857 | Generation of electrical energy in a microbial fuel cell coupling acetate oxidation to Fe(3+) reduction and isolation of the involved bacteria. | Becerril-Varela K, Serment-Guerrero JH, Manzanares-Leal GL, Ramirez-Duran N, Guerrero-Barajas C | World J Microbiol Biotechnol | 10.1007/s11274-021-03077-4 | 2021 | Acetates/metabolism, Bacteria/*classification/genetics/isolation & purification, Biodegradation, Environmental, Bioelectric Energy Sources/*microbiology, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Iron/*chemistry, Oxidation-Reduction, Polymorphism, Restriction Fragment Length, RNA, Ribosomal, 16S/genetics, Sequence Analysis, RNA/*methods, Sewage/microbiology | Transcriptome |
Genetics | 35779647 | Engineering Citrobacter freundii using CRISPR/Cas9 system. | Alfaro T, Elmore JR, Stromberg ZR, Hutchison JR, Hess BM | J Microbiol Methods | 10.1016/j.mimet.2022.106533 | 2022 | *CRISPR-Cas Systems, *Citrobacter freundii/genetics, Gene Editing/methods, Genome, Bacterial | Biotechnology |
36121562 | Iron reducing sludge as a source of electroactive bacteria: assessing iron reduction in biofilm bacteria, planktonic cells and isolates from a microbial fuel cell. | Gonzalez-Paz JR, Becerril-Varela K, Guerrero-Barajas C | Arch Microbiol | 10.1007/s00203-022-03253-6 | 2022 | *Bioelectric Energy Sources/microbiology, Biofilms, Carbon, Electricity, Iron, Plankton, Sewage | ||
36263957 | LC-MS profile, in vitro acetylcholinesterase inhibitory, antibacterial and hemostatic properties of Ranunculus bullatus extract. | Lemoui R, Cheriet T, Kahlouche F, Noman L, Seghiri R, Abudunia A | Nat Prod Res | 10.1080/14786419.2022.2136661 | 2022 |
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
9097 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 30039) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-30039 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
42192 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/9617 | ||||
44198 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 418) | https://www.ccug.se/strain?id=418 | |||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
68368 | Automatically annotated from API 20E | |||||
68382 | Automatically annotated from API zym | |||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
73817 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID1750.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
119459 | Curators of the CIP | Collection of Institut Pasteur (CIP 57.32) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2057.32 |