Strain identifier

BacDive ID: 4323

Type strain: Yes

Species: Citrobacter amalonaticus

Culture col. no.: CCUG 4860, CECT 863, DSM 4593, ATCC 25405, CIP 82.89, NCTC 10805

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 1784

BacDive-ID: 4323

DSM-Number: 4593

keywords: aerobe, Bacteria, 16S sequence, genome sequence, mesophilic

description: Citrobacter amalonaticus CCUG 4860 is an aerobe, mesophilic bacterium that was isolated from Human feces.

strain history: <- CIP <- NCTC

doi: 10.13145/bacdive4323.20201210.5

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/proteobacteria
  • domain: Bacteria
  • phylum: Proteobacteria
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Enterobacteriaceae
  • genus: Citrobacter
  • species: Citrobacter amalonaticus
  • full scientific name: Citrobacter amalonaticus (Young et al. 1971) Brenner and Farmer 1982
  • synonyms

    • @ref: 20215
    • synonym: Levinea amalonatica

@ref: 1784

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacteriales, not validated

family: Enterobacteriaceae

genus: Citrobacter

species: Citrobacter amalonaticus

full scientific name: Citrobacter amalonaticus (Young et al. 1971) Brenner and Farmer 1982

type strain: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
1784REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium1a.pdf
38207MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)

culture temp

@refgrowthtypetemperaturerange
1784positivegrowth30mesophilic
38207positivegrowth30mesophilic
44799positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 44799
  • oxygen tolerance: aerobe

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGELGLUMANINOSorRHASACMELAMYARAOX
1784++-++---+--++-++--++-

Isolation, sampling and environmental information

isolation

  • @ref: 44799
  • sample type: Human feces

isolation source categories

Cat1Cat2Cat3
#Host Body Product#Gastrointestinal tract#Feces (Stool)
#Host#Human

Safety information

risk assessment

  • @ref: 1784
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Citrobacter amalonaticus partial 16S rRNA gene, type strain CECT 863TFR8704411504ena35703
20218Citrobacter amalonaticus strain LMG 7873 16S ribosomal RNA gene, partial sequenceHQ9929461494ena35703

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Citrobacter amalonaticus FDAARGOS_165GCA_001558935completencbi35703
66792Citrobacter amalonaticus FDAARGOS_122GCA_001559075completencbi35703
66792Citrobacter amalonaticus 133355-SW-C4-CamGCA_006965505completencbi35703
66792Citrobacter amalonaticus NCTC10805GCA_900460855contigncbi35703
66792Citrobacter amalonaticus FDAARGOS_166GCA_001471655contigncbi35703
66792Citrobacter amalonaticus FDAARGOS_490GCA_003938795contigncbi35703
66792Citrobacter amalonaticus S646GCA_002918555contigncbi35703
66792Citrobacter amalonaticus BIOML-A6GCA_009876825scaffoldncbi35703
66792Citrobacter amalonaticus S648GCA_002919495contigncbi35703
66792Citrobacter amalonaticus BIOML-A4GCA_009881185contigncbi35703
66792Citrobacter amalonaticus BIOML-A8GCA_009876755scaffoldncbi35703
66792Citrobacter amalonaticus BIOML-A9GCA_009876765contigncbi35703
66792Citrobacter amalonaticus S647GCA_002918535contigncbi35703
66792Citrobacter amalonaticus YG8GCA_001276125contigncbi35703
66792Citrobacter amalonaticus BIOML-A10GCA_009876705contigncbi35703
66792Citrobacter amalonaticus BIOML-A7GCA_009876815contigncbi35703
66792Citrobacter amalonaticus BIOML-A5GCA_009876795contigncbi35703
66792Citrobacter amalonaticus BIOML-A12GCA_009876715scaffoldncbi35703
66792Citrobacter amalonaticus BIOML-A2GCA_009881175scaffoldncbi35703
66792Citrobacter amalonaticus ca_0067GCA_004167485contigncbi35703
66792Citrobacter amalonaticus S1285GCA_002918935contigncbi35703
66792Citrobacter amalonaticus BIOML-A3GCA_009881155contigncbi35703
66792Citrobacter amalonaticus MGH151GCA_002151695scaffoldncbi35703
66792Citrobacter amalonaticus YG6GCA_001276105contigncbi35703
66792Citrobacter amalonaticus DEA_JEAGCA_902498925contigncbi35703
66792Citrobacter amalonaticus MAS_THIGCA_902506645contigncbi35703
66792Citrobacter amalonaticus PER_JOSGCA_902506695contigncbi35703
66792Citrobacter amalonaticus FOU_CYRGCA_902506735contigncbi35703
66792Citrobacter amalonaticus ELB_MARGCA_902506715contigncbi35703
66792Citrobacter amalonaticus BIOML-A11GCA_009876695scaffoldncbi35703
66792Citrobacter amalonaticus L8AGCA_000731055contigncbi35703
66792Citrobacter amalonaticus GTA-817-RBA-P2GCA_000972645contigncbi35703
66792Citrobacter amalonaticus BIOML-A1GCA_009881195scaffoldncbi35703
66792Citrobacter amalonaticus 3e8AGCA_000936345contigncbi35703
66792Citrobacter amalonaticus 3e8BGCA_001373155contigncbi35703
66792Citrobacter amalonaticus35703.23wgspatric35703
66792Citrobacter amalonaticus35703.18wgspatric35703
66792Citrobacter amalonaticus strain 133355-SW-C4-Cam35703.76completepatric35703
66792Citrobacter amalonaticus strain BIOML-A135703.95wgspatric35703
66792Citrobacter amalonaticus strain BIOML-A1035703.85wgspatric35703
66792Citrobacter amalonaticus strain BIOML-A1135703.84wgspatric35703
66792Citrobacter amalonaticus strain BIOML-A1235703.87wgspatric35703
66792Citrobacter amalonaticus strain BIOML-A235703.93wgspatric35703
66792Citrobacter amalonaticus strain BIOML-A335703.92wgspatric35703
66792Citrobacter amalonaticus strain BIOML-A435703.94wgspatric35703
66792Citrobacter amalonaticus strain BIOML-A535703.89wgspatric35703
66792Citrobacter amalonaticus strain BIOML-A635703.90wgspatric35703
66792Citrobacter amalonaticus strain BIOML-A735703.91wgspatric35703
66792Citrobacter amalonaticus strain BIOML-A835703.86wgspatric35703
66792Citrobacter amalonaticus strain BIOML-A935703.88wgspatric35703
66792Citrobacter amalonaticus strain DEA_JEA35703.77wgspatric35703
66792Citrobacter amalonaticus strain ELB_MAR35703.80wgspatric35703
66792Citrobacter amalonaticus strain FDAARGOS_12235703.30completepatric35703
66792Citrobacter amalonaticus strain FDAARGOS_16535703.29completepatric35703
66792Citrobacter amalonaticus strain FDAARGOS_16535703.40plasmidpatric35703
66792Citrobacter amalonaticus strain FDAARGOS_16635703.24completepatric35703
66792Citrobacter amalonaticus strain FDAARGOS_490 strain Not applicable35703.60wgspatric35703
66792Citrobacter amalonaticus strain FOU_CYR35703.81wgspatric35703
66792Citrobacter amalonaticus strain GTA-817-RBA-P235703.15wgspatric35703
66792Citrobacter amalonaticus strain L8A35703.8wgspatric35703
66792Citrobacter amalonaticus strain MAS_THI35703.78wgspatric35703
66792Citrobacter amalonaticus strain MGH15135703.35wgspatric35703
66792Citrobacter amalonaticus strain NCTC1080535703.59wgspatric35703
66792Citrobacter amalonaticus strain PER_JOS35703.79wgspatric35703
66792Citrobacter amalonaticus strain S128535703.52wgspatric35703
66792Citrobacter amalonaticus strain S64635703.51wgspatric35703
66792Citrobacter amalonaticus strain S64735703.50wgspatric35703
66792Citrobacter amalonaticus strain S64835703.53wgspatric35703
66792Citrobacter amalonaticus strain YG635703.16wgspatric35703
66792Citrobacter amalonaticus strain YG835703.17wgspatric35703
66792Citrobacter amalonaticus strain ca_006735703.65wgspatric35703

External links

@ref: 1784

culture collection no.: CCUG 4860, CECT 863, DSM 4593, ATCC 25405, CIP 82.89, NCTC 10805

straininfo link

@refpassport
20218http://www.straininfo.net/strains/40676
20218http://www.straininfo.net/strains/40672
20218http://www.straininfo.net/strains/231997
20218http://www.straininfo.net/strains/40677

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
1784Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 4593)https://www.dsmz.de/collection/catalogue/details/culture/DSM-4593
20215D.Gleim, M.Kracht, N.Weiss et. al.http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.htmlProkaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
38207Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/11364
44799Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 4860)https://www.ccug.se/strain?id=4860
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)