Strain identifier

BacDive ID: 4317

Type strain: Yes

Species: Buttiauxella izardii

Strain Designation: S3/2-161

Strain history: CIP <- 1999, P.A.D Grimont, Inst. Pasteur, Paris, France <- E.H. Müller: strain S3/2-161

NCBI tax ID(s): 1354254 (strain), 82991 (species)

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General

@ref: 3472

BacDive-ID: 4317

DSM-Number: 9397

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, motile

description: Buttiauxella izardii S3/2-161 is an aerobe, mesophilic, motile bacterium that was isolated from snail.

NCBI tax id

NCBI tax idMatching level
82991species
1354254strain

strain history

@refhistory
3472<- H. E. Müller; S3/2-161
120303CIP <- 1999, P.A.D Grimont, Inst. Pasteur, Paris, France <- E.H. Müller: strain S3/2-161

doi: 10.13145/bacdive4317.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Enterobacteriaceae
  • genus: Buttiauxella
  • species: Buttiauxella izardii
  • full scientific name: Buttiauxella izardii Müller et al. 1996

@ref: 3472

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacteriales, not validated

family: Enterobacteriaceae

genus: Buttiauxella

species: Buttiauxella izardii

full scientific name: Buttiauxella izardii Müller et al. 1996

strain designation: S3/2-161

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram staincell shape
69480yes97.909
6948099.969negative
120303yesnegativerod-shaped

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
3472CASO AGAR (MERCK 105458) (DSMZ Medium 220)yeshttps://mediadive.dsmz.de/medium/220Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water
39504MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)
120303CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3

culture temp

@refgrowthtypetemperaturerange
3472positivegrowth28mesophilic
39504positivegrowth30mesophilic
52780positivegrowth30mesophilic
120303positivegrowth5-41

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
52780aerobe
120303facultative anaerobe

spore formation

@refspore formationconfidence
69481no100
69480no99.303

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate+builds acid from
68371gluconate+builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose+builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose-builds acid from32528
68371gentiobiose+builds acid from28066
68371xylitol-builds acid from17151
68371glycogen-builds acid from28087
68371starch-builds acid from28017
68371raffinose-builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371trehalose+builds acid from27082
68371sucrose-builds acid from17992
68371melibiose+builds acid from28053
68371lactose+builds acid from17716
68371cellobiose+builds acid from17057
68371salicin+builds acid from17814
68371esculin+builds acid from4853
68371arbutin+builds acid from18305
68371amygdalin-builds acid from27613
68371N-acetylglucosamine+builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol+builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose+builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose+builds acid from16024
68371D-fructose+builds acid from15824
68371D-glucose+builds acid from17634
68371D-galactose+builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose+builds acid from65327
68371D-ribose+builds acid from16988
68371L-arabinose+builds acid from30849
68371D-arabinose+builds acid from17108
68371erythritol-builds acid from17113
68371glycerol+builds acid from17754
120303mannitol+fermentation29864
120303citrate+carbon source16947
120303glucose+fermentation17234
120303lactose+fermentation17716
120303nitrate+reduction17632
120303nitrite-reduction16301
120303malonate+assimilation15792
120303sodium thiosulfate-builds gas from132112
120303glucose+degradation17234

antibiotic resistance

  • @ref: 120303
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: yes
  • is resistant: no

metabolite production

  • @ref: 120303
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
12030315688acetoin-
12030317234glucose+

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382beta-glucosidase+3.2.1.21
68382alpha-glucosidase+3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase+3.2.1.23
68382alpha-galactosidase+3.2.1.22
68382naphthol-AS-BI-phosphohydrolase+
68382acid phosphatase+3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin-3.4.21.4
68382cystine arylamidase+3.4.11.3
68382valine arylamidase+
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)-
68382esterase (C 4)+
68382alkaline phosphatase+3.1.3.1
120303oxidase-
120303beta-galactosidase+3.2.1.23
120303alcohol dehydrogenase-1.1.1.1
120303gelatinase-
120303catalase+1.11.1.6
120303lysine decarboxylase-4.1.1.18
120303ornithine decarboxylase+4.1.1.17
120303phenylalanine ammonia-lyase-4.3.1.24
120303tryptophan deaminase-
120303urease-3.5.1.5

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
120303-++--+++--++++-+++--

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
120303+-++++---++++-+--+---+-+++++/-++-+------+----+--++-

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
120303+++++-+--+-+-+++-+++++-++------+-+--------+++----+---++++--++-+++----------+---++-----+--+-++++----

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
3472snailBraunschweigGermanyDEUEurope
120303Animal, SnailGermanyDEUEurope

isolation source categories

  • Cat1: #Host
  • Cat2: #Invertebrates (Other)
  • Cat3: #Mollusca

taxonmaps

  • @ref: 69479
  • File name: preview.99_2027.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_6;96_7;97_411;98_1588;99_2027&stattab=map
  • Last taxonomy: Buttiauxella
  • 16S sequence: AJ233404
  • Sequence Identity:
  • Total samples: 7158
  • soil counts: 778
  • aquatic counts: 1274
  • animal counts: 4089
  • plant counts: 1017

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
34721Risk group (German classification)
1203031Risk group (French classification)

Sequence information

16S sequences

  • @ref: 20218
  • description: Buttiauxella izardii 16S rRNA gene (strain DSM 9397)
  • accession: AJ233404
  • length: 1498
  • database: ena
  • NCBI tax ID: 82991

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Buttiauxella izardii CCUG 35510GCA_003601925contigncbi82991
66792Buttiauxella izardii strain CCUG 3551082991.3wgspatric82991
66792Buttiauxella izardii CCUG 355102835010371draftimg82991

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileyes90.153no
flagellatedno55.995no
gram-positiveno98.221no
anaerobicno96.889no
halophileno88.942no
spore-formingno94.202no
thermophileno99.604no
glucose-utilyes94.739no
aerobicyes86.735yes
glucose-fermentyes92.523no

External links

@ref: 3472

culture collection no.: CCUG 35510, DSM 9397, ATCC 51606, CCM 4877, CIP 106357, CDC 9511-94

straininfo link

  • @ref: 73809
  • straininfo: 43077

literature

  • topic: Phylogeny
  • Pubmed-ID: 11534554
  • title: Emended description of Buttiauxella agrestis with recognition of six new species of Buttiauxella and two new species of Kluyvera: Buttiauxella ferragutiae sp. nov., Buttiauxella gaviniae sp. nov., Buttiauxella brennerae sp. nov., Buttiauxella izardii sp. nov., Buttiauxella noackiae sp. nov., Buttiauxella warmboldiae sp. nov., Kluyvera cochleae sp. nov., and Kluyvera georgiana sp. nov.
  • authors: Muller HE, Brenner DJ, Fanning GR, Grimont PA, Kampfer P
  • journal: Int J Syst Bacteriol
  • DOI: 10.1099/00207713-46-1-50
  • year: 1996
  • mesh: Animals, Bacterial Typing Techniques, DNA, Bacterial/genetics, Enterobacteriaceae/*classification/genetics/isolation & purification/metabolism, Humans, Intestines/microbiology, Mollusca/*microbiology, Nucleic Acid Hybridization, Phenotype, Snails/*microbiology, Soil Microbiology, Terminology as Topic, Water Microbiology
  • topic2: Pathogenicity

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
3472Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 9397)https://www.dsmz.de/collection/catalogue/details/culture/DSM-9397
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
39504Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/18479
52780Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 35510)https://www.ccug.se/strain?id=35510
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
73809Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID43077.1StrainInfo: A central database for resolving microbial strain identifiers
120303Curators of the CIPCollection of Institut Pasteur (CIP 106357)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20106357