Strain identifier

BacDive ID: 4316

Type strain: Yes

Species: Buttiauxella brennerae

Strain Designation: S1/6-571

Strain history: CIP <- 2000, CCUG <- 1996, DSMZ <- H.E. Müller: strain S1/6-571

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 3471

BacDive-ID: 4316

DSM-Number: 9396

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, motile

description: Buttiauxella brennerae S1/6-571 is an aerobe, mesophilic, motile bacterium that was isolated from snail.

NCBI tax id

NCBI tax idMatching level
82988species
1354251strain

strain history

@refhistory
3471<- H. E. Müller; S1/6-571
116997CIP <- 2000, CCUG <- 1996, DSMZ <- H.E. Müller: strain S1/6-571

doi: 10.13145/bacdive4316.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Enterobacteriaceae
  • genus: Buttiauxella
  • species: Buttiauxella brennerae
  • full scientific name: Buttiauxella brennerae Müller et al. 1996

@ref: 3471

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacteriales, not validated

family: Enterobacteriaceae

genus: Buttiauxella

species: Buttiauxella brennerae

full scientific name: Buttiauxella brennerae Müller et al. 1996

strain designation: S1/6-571

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram staincell shape
69480yes98.573
6948099.982negative
116997nonegativerod-shaped

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
3471CASO AGAR (MERCK 105458) (DSMZ Medium 220)yeshttps://mediadive.dsmz.de/medium/220Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water
40324MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)
116997CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3

culture temp

@refgrowthtypetemperaturerange
3471positivegrowth28mesophilic
40324positivegrowth30mesophilic
52779positivegrowth30mesophilic
116997positivegrowth5-37
116997nogrowth41thermophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
52779aerobe
116997facultative anaerobe

spore formation

@refspore formationconfidence
69481no100
69480no99.851

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate+builds acid from
68371Potassium 2-ketogluconate+builds acid from
68371gluconate+builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol+builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371turanose+builds acid from32528
68371gentiobiose+builds acid from28066
68371xylitol-builds acid from17151
68371glycogen-builds acid from28087
68371starch-builds acid from28017
68371raffinose+builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371trehalose+builds acid from27082
68371sucrose+builds acid from17992
68371melibiose+builds acid from28053
68371lactose+builds acid from17716
68371maltose+builds acid from17306
68371cellobiose+builds acid from17057
68371salicin+builds acid from17814
68371esculin+builds acid from4853
68371arbutin+builds acid from18305
68371methyl alpha-D-glucopyranoside+builds acid from320061
68371methyl alpha-D-mannoside+builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol-builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose+builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose+builds acid from16024
68371D-fructose+builds acid from15824
68371D-glucose+builds acid from17634
68371D-galactose+builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371L-xylose-builds acid from65328
68371D-xylose+builds acid from65327
68371D-ribose+builds acid from16988
68371L-arabinose+builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol+builds acid from17754
116997mannitol+fermentation29864
116997citrate+carbon source16947
116997glucose+fermentation17234
116997lactose-fermentation17716
116997nitrate+reduction17632
116997nitrite-reduction16301
116997malonate+assimilation15792
116997sodium thiosulfate-builds gas from132112
116997glucose+degradation17234

antibiotic resistance

  • @ref: 116997
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: yes
  • is resistant: no

metabolite production

  • @ref: 116997
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
11699715688acetoin-
11699717234glucose+

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase+3.2.1.21
68382alpha-glucosidase+3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase+3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase+
68382acid phosphatase+3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin-3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase-
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)-
68382esterase (C 4)-
68382alkaline phosphatase+3.1.3.1
116997oxidase-
116997beta-galactosidase+3.2.1.23
116997alcohol dehydrogenase-1.1.1.1
116997gelatinase-
116997catalase+1.11.1.6
116997lysine decarboxylase-4.1.1.18
116997ornithine decarboxylase-4.1.1.17
116997phenylalanine ammonia-lyase-4.3.1.24
116997tryptophan deaminase-
116997urease-3.5.1.5

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
116997-+---+----++-+-++---

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
116997+--+++-+/--++++-+----+++/-+/-+++++++++--+---+++/----+-+++

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
116997+++++-++++++-+++++++++++--+-+--+-+++-+-+-+-++----+---++++++++-+++++-------++---++-+---+--++++++----

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
3471snailBraunschweigGermanyDEUEurope
116997Animal, Snail

isolation source categories

  • Cat1: #Host
  • Cat2: #Invertebrates (Other)
  • Cat3: #Mollusca

taxonmaps

  • @ref: 69479
  • File name: preview.99_2027.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_6;96_7;97_411;98_1588;99_2027&stattab=map
  • Last taxonomy: Buttiauxella
  • 16S sequence: AJ233401
  • Sequence Identity:
  • Total samples: 7158
  • soil counts: 778
  • aquatic counts: 1274
  • animal counts: 4089
  • plant counts: 1017

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
34711Risk group (German classification)
1169971Risk group (French classification)

Sequence information

16S sequences

  • @ref: 20218
  • description: Buttiauxella brennerae 16S rRNA gene (strain DSM 9396)
  • accession: AJ233401
  • length: 1505
  • database: ena
  • NCBI tax ID: 82988

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Buttiauxella brennerae ATCC 51605GCA_001654925contigncbi1354251
66792Buttiauxella brennerae ATCC 516051354251.4wgspatric1354251
66792Buttiauxella brennerae ATCC 516052791354934draftimg1354251

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileyes89.372no
gram-positiveno97.746no
anaerobicno97.047no
halophileno91.98no
spore-formingno94.299no
thermophileno99.59yes
glucose-utilyes96.037no
flagellatedno62.353no
aerobicyes85.227no
glucose-fermentyes94.18no

External links

@ref: 3471

culture collection no.: DSM 9396, ATCC 51605, CCM 4876, CCUG 35509, CIP 106477, CDC 9510-94

straininfo link

  • @ref: 73808
  • straininfo: 46159

literature

  • topic: Phylogeny
  • Pubmed-ID: 11534554
  • title: Emended description of Buttiauxella agrestis with recognition of six new species of Buttiauxella and two new species of Kluyvera: Buttiauxella ferragutiae sp. nov., Buttiauxella gaviniae sp. nov., Buttiauxella brennerae sp. nov., Buttiauxella izardii sp. nov., Buttiauxella noackiae sp. nov., Buttiauxella warmboldiae sp. nov., Kluyvera cochleae sp. nov., and Kluyvera georgiana sp. nov.
  • authors: Muller HE, Brenner DJ, Fanning GR, Grimont PA, Kampfer P
  • journal: Int J Syst Bacteriol
  • DOI: 10.1099/00207713-46-1-50
  • year: 1996
  • mesh: Animals, Bacterial Typing Techniques, DNA, Bacterial/genetics, Enterobacteriaceae/*classification/genetics/isolation & purification/metabolism, Humans, Intestines/microbiology, Mollusca/*microbiology, Nucleic Acid Hybridization, Phenotype, Snails/*microbiology, Soil Microbiology, Terminology as Topic, Water Microbiology
  • topic2: Pathogenicity

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
3471Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 9396)https://www.dsmz.de/collection/catalogue/details/culture/DSM-9396
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
40324Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/18612
52779Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 35509)https://www.ccug.se/strain?id=35509
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
73808Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID46159.1StrainInfo: A central database for resolving microbial strain identifiers
116997Curators of the CIPCollection of Institut Pasteur (CIP 106477)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20106477