Strain identifier
BacDive ID: 4313
Type strain:
Species: Buttiauxella ferragutiae
Strain Designation: 78-31
Strain history: CIP <- 1999, P.A.D. Grimont, Inst. Pasteur, Paris, France <- F. Gavini, CUETM: strain 78-31
NCBI tax ID(s): 1354252 (strain), 82989 (species)
General
@ref: 3468
BacDive-ID: 4313
DSM-Number: 9390
keywords: genome sequence, 16S sequence, Bacteria, facultative anaerobe, mesophilic, motile
description: Buttiauxella ferragutiae 78-31 is a facultative anaerobe, mesophilic, motile bacterium that was isolated from soil.
NCBI tax id
NCBI tax id | Matching level |
---|---|
1354252 | strain |
82989 | species |
strain history
@ref | history |
---|---|
3468 | <- H. E. Müller <- CUETM |
119330 | CIP <- 1999, P.A.D. Grimont, Inst. Pasteur, Paris, France <- F. Gavini, CUETM: strain 78-31 |
doi: 10.13145/bacdive4313.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Enterobacterales
- family: Enterobacteriaceae
- genus: Buttiauxella
- species: Buttiauxella ferragutiae
- full scientific name: Buttiauxella ferragutiae Müller et al. 1996
@ref: 3468
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Enterobacteriales, not validated
family: Enterobacteriaceae
genus: Buttiauxella
species: Buttiauxella ferragutiae
full scientific name: Buttiauxella ferragutiae Müller et al. 1996
strain designation: 78-31
type strain: yes
Morphology
cell morphology
@ref | motility | confidence | gram stain | cell shape |
---|---|---|---|---|
69480 | yes | 97.934 | ||
69480 | 99.987 | negative | ||
119330 | yes | negative | rod-shaped |
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
3468 | CASO AGAR (MERCK 105458) (DSMZ Medium 220) | yes | https://mediadive.dsmz.de/medium/220 | Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water |
39502 | MEDIUM 29- Brain heart agar | yes | Distilled water make up to (1000.000 ml);Brain heart infusion agar (52.000 g) | |
119330 | CIP Medium 29 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=29 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
3468 | positive | growth | 28 | mesophilic |
39502 | positive | growth | 30 | mesophilic |
119330 | positive | growth | 5-37 | |
119330 | no | growth | 41 | thermophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 119330
- oxygen tolerance: facultative anaerobe
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | no | 100 |
69480 | no | 99.52 |
metabolite utilization
@ref | metabolite | utilization activity | kind of utilization tested | Chebi-ID |
---|---|---|---|---|
68371 | Potassium 5-ketogluconate | - | builds acid from | |
68371 | Potassium 2-ketogluconate | + | builds acid from | |
68371 | gluconate | + | builds acid from | 24265 |
68371 | L-arabitol | - | builds acid from | 18403 |
68371 | D-arabitol | - | builds acid from | 18333 |
68371 | L-fucose | - | builds acid from | 18287 |
68371 | D-fucose | - | builds acid from | 28847 |
68371 | D-tagatose | - | builds acid from | 16443 |
68371 | D-lyxose | - | builds acid from | 62318 |
68371 | turanose | - | builds acid from | 32528 |
68371 | gentiobiose | + | builds acid from | 28066 |
68371 | xylitol | - | builds acid from | 17151 |
68371 | glycogen | - | builds acid from | 28087 |
68371 | starch | - | builds acid from | 28017 |
68371 | raffinose | - | builds acid from | 16634 |
68371 | melezitose | - | builds acid from | 6731 |
68371 | inulin | - | builds acid from | 15443 |
68371 | trehalose | + | builds acid from | 27082 |
68371 | sucrose | - | builds acid from | 17992 |
68371 | melibiose | + | builds acid from | 28053 |
68371 | lactose | + | builds acid from | 17716 |
68371 | maltose | + | builds acid from | 17306 |
68371 | cellobiose | + | builds acid from | 17057 |
68371 | salicin | + | builds acid from | 17814 |
68371 | esculin | + | builds acid from | 4853 |
68371 | arbutin | + | builds acid from | 18305 |
68371 | amygdalin | - | builds acid from | 27613 |
68371 | N-acetylglucosamine | + | builds acid from | 59640 |
68371 | methyl alpha-D-glucopyranoside | + | builds acid from | 320061 |
68371 | methyl alpha-D-mannoside | - | builds acid from | 43943 |
68371 | D-sorbitol | + | builds acid from | 17924 |
68371 | D-mannitol | + | builds acid from | 16899 |
68371 | myo-inositol | + | builds acid from | 17268 |
68371 | galactitol | - | builds acid from | 16813 |
68371 | L-rhamnose | + | builds acid from | 62345 |
68371 | L-sorbose | - | builds acid from | 17266 |
68371 | D-mannose | + | builds acid from | 16024 |
68371 | D-fructose | + | builds acid from | 15824 |
68371 | D-glucose | + | builds acid from | 17634 |
68371 | D-galactose | + | builds acid from | 12936 |
68371 | methyl beta-D-xylopyranoside | - | builds acid from | 74863 |
68371 | ribitol | - | builds acid from | 15963 |
68371 | L-xylose | + | builds acid from | 65328 |
68371 | D-xylose | + | builds acid from | 65327 |
68371 | D-ribose | + | builds acid from | 16988 |
68371 | L-arabinose | - | builds acid from | 30849 |
68371 | D-arabinose | - | builds acid from | 17108 |
68371 | erythritol | - | builds acid from | 17113 |
68371 | glycerol | + | builds acid from | 17754 |
68368 | L-arabinose | + | fermentation | 30849 |
68368 | amygdalin | + | fermentation | 27613 |
68368 | melibiose | + | fermentation | 28053 |
68368 | sucrose | - | fermentation | 17992 |
68368 | L-rhamnose | + | fermentation | 62345 |
68368 | sorbitol | + | fermentation | 30911 |
68368 | myo-inositol | + | fermentation | 17268 |
68368 | D-mannitol | + | fermentation | 16899 |
68368 | D-glucose | + | fermentation | 17634 |
68368 | gelatin | - | hydrolysis | 5291 |
68368 | tryptophan | - | energy source | 27897 |
68368 | urea | - | hydrolysis | 16199 |
68368 | citrate | + | assimilation | 16947 |
68368 | ornithine | + | degradation | 18257 |
68368 | lysine | + | degradation | 25094 |
68368 | arginine | - | hydrolysis | 29016 |
119330 | mannitol | + | fermentation | 29864 |
119330 | citrate | + | carbon source | 16947 |
119330 | glucose | + | fermentation | 17234 |
119330 | lactose | - | fermentation | 17716 |
119330 | nitrate | + | reduction | 17632 |
119330 | nitrite | - | reduction | 16301 |
119330 | malonate | - | assimilation | 15792 |
119330 | sodium thiosulfate | - | builds gas from | 132112 |
119330 | glucose | + | degradation | 17234 |
antibiotic resistance
- @ref: 119330
- metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
- is antibiotic: yes
- is sensitive: no
- is resistant: yes
metabolite production
@ref | Chebi-ID | metabolite | production |
---|---|---|---|
68368 | 15688 | acetoin | yes |
68368 | 35581 | indole | no |
68368 | 16136 | hydrogen sulfide | no |
119330 | 35581 | indole | no |
metabolite tests
@ref | Chebi-ID | metabolite | voges-proskauer-test | indole test | methylred-test |
---|---|---|---|---|---|
68368 | 15688 | acetoin | + | ||
68368 | 35581 | indole | - | ||
119330 | 15688 | acetoin | - | ||
119330 | 17234 | glucose | + |
enzymes
@ref | value | activity | ec |
---|---|---|---|
68382 | alpha-fucosidase | - | 3.2.1.51 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | N-acetyl-beta-glucosaminidase | + | 3.2.1.52 |
68382 | beta-glucosidase | + | 3.2.1.21 |
68382 | alpha-glucosidase | + | 3.2.1.20 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | beta-galactosidase | + | 3.2.1.23 |
68382 | alpha-galactosidase | + | 3.2.1.22 |
68382 | naphthol-AS-BI-phosphohydrolase | + | |
68382 | acid phosphatase | + | 3.1.3.2 |
68382 | alpha-chymotrypsin | - | 3.4.21.1 |
68382 | trypsin | + | 3.4.21.4 |
68382 | cystine arylamidase | + | 3.4.11.3 |
68382 | valine arylamidase | + | |
68382 | leucine arylamidase | + | 3.4.11.1 |
68382 | lipase (C 14) | - | |
68382 | esterase lipase (C 8) | - | |
68382 | esterase (C 4) | + | |
68382 | alkaline phosphatase | + | 3.1.3.1 |
68368 | cytochrome oxidase | - | 1.9.3.1 |
68368 | gelatinase | - | |
68368 | tryptophan deaminase | - | 4.1.99.1 |
68368 | urease | - | 3.5.1.5 |
68368 | ornithine decarboxylase | + | 4.1.1.17 |
68368 | lysine decarboxylase | + | 4.1.1.18 |
68368 | arginine dihydrolase | - | 3.5.3.6 |
68368 | beta-galactosidase | + | 3.2.1.23 |
119330 | oxidase | - | |
119330 | beta-galactosidase | + | 3.2.1.23 |
119330 | alcohol dehydrogenase | - | 1.1.1.1 |
119330 | gelatinase | - | |
119330 | catalase | + | 1.11.1.6 |
119330 | lysine decarboxylase | + | 4.1.1.18 |
119330 | ornithine decarboxylase | - | 4.1.1.17 |
119330 | phenylalanine ammonia-lyase | - | 4.3.1.24 |
119330 | tryptophan deaminase | - | |
119330 | urease | - | 3.5.1.5 |
fatty acid profile
fatty acids
@ref fatty acid percentage ECL 52777 C12:0 2.6 12 52777 C14:0 8 14 52777 C15:0 2 15 52777 C16:0 15 16 52777 C12:0 ALDE ? 2.5 10.915 52777 C13:0 3OH/C15:1 i I/H 0.5 14.469 52777 C13:0 ISO 2OH 0.5 13.814 52777 C14:0 3OH/C16:1 ISO I 16 15.485 52777 C16:1 ω7c 42.6 15.819 52777 C17:0 CYCLO 2.2 16.888 52777 C18:1 ω7c /12t/9t 7.4 17.824 52777 Unidentified 0.7 18.558 - type of FA analysis: whole cell analysis
- method/protocol: CCUG
API zym
@ref | Control | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
119330 | - | + | + | - | - | + | + | + | + | - | + | + | + | + | - | + | + | + | - | - |
API 20E
@ref | ONPG | ADH Arg | LDC Lys | ODC | CIT | H2S | URE | TDA Trp | IND | VP | GEL | GLU | MAN | INO | Sor | RHA | SAC | MEL | AMY | ARA | OX |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
3468 | + | - | + | + | + | - | - | - | - | + | - | + | + | + | + | + | - | + | + | + | - |
API 50CHac
@ref | GLY | ERY | DARA | LARA | RIB | DXYL | LXYL | ADO | MDX | GAL | GLU | FRU | MNE | SBE | RHA | DUL | INO | MAN | SOR | MDM | MDG | NAG | AMY | ARB | ESC | SAL | CEL | MAL | LAC | MEL | SAC | TRE | INU | MLZ | RAF | AMD | GLYG | XLT | GEN | TUR | LYX | TAG | DFUC | LFUC | DARL | LARL | GNT | 2KG | 5KG |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
119330 | + | - | - | - | + | + | + | - | - | + | + | + | + | - | + | - | + | + | + | - | + | + | - | + | + | + | + | + | + | + | - | + | - | - | - | - | - | - | + | - | - | - | - | - | - | - | + | + | - |
API biotype100
@ref | GLU | FRU | GAL | TRE | MNE | SBE | MEL | SAC | RAF | MTE | MAL | LAC | LTE | MbGa | MaGa | CEL | GEN | MbGu | ESC | RIB | ARA | XYL | PLE | RHA | FUC | MLZ | DARL | LARL | XLT | DUL | TAG | GLY | INO | MAN | MTL | TUR | SOR | ADO | HBG | LYX | ERY | MDG | 3MDG | SAT | MUC | LTAT | DTAT | MTAT | DMLT | LMLT | CATE | TATE | TTE | CIT | GRT | GAT | 2KG | 5KG | TRY | NAG | GNT | PAC | PAT | pOBE | QAT | GTE | mOBE | BAT | PPAT | CMT | TGE | BET | PCE | ABT | HIN | LAT | CAP | CYT | HIS | SUC | FUM | GRE | GYT | AVT | ETN | TTN | GLN | ITA | 3OBU | APT | GTT | PRO | DALA | LALA | SER | MNT | PROP | TYR | 2KT |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
119330 | + | + | + | + | + | - | + | - | + | + | + | + | - | + | + | + | + | + | + | + | + | + | + | + | - | - | - | - | - | - | - | + | + | + | + | + | + | - | - | - | - | - | + | + | + | - | - | - | - | + | - | - | - | - | + | + | + | - | - | + | + | + | + | + | + | - | - | - | - | - | - | - | - | - | - | + | - | - | - | + | + | - | + | - | - | - | + | - | - | + | + | + | + | + | + | - | - | - | - |
Isolation, sampling and environmental information
isolation
@ref | sample type | country | origin.country | continent |
---|---|---|---|---|
3468 | soil | France | FRA | Europe |
119330 | Environment, Soil | France | FRA | Europe |
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
taxonmaps
- @ref: 69479
- File name: preview.99_2027.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_6;96_7;97_411;98_1588;99_2027&stattab=map
- Last taxonomy: Buttiauxella
- 16S sequence: LN824004
- Sequence Identity:
- Total samples: 7158
- soil counts: 778
- aquatic counts: 1274
- animal counts: 4089
- plant counts: 1017
Safety information
risk assessment
@ref | biosafety level | biosafety level comment |
---|---|---|
3468 | 1 | Risk group (German classification) |
119330 | 1 | Risk group (French classification) |
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | Buttiauxella ferragutiae 16S rRNA gene (strain DSM 9390) | AJ233402 | 1504 | ena | 82989 |
3468 | Buttiauxella ferragutiae partial 16S rRNA gene, type strain DSM 9390T, clone 1 | LN824001 | 1530 | ena | 82989 |
3468 | Buttiauxella ferragutiae partial 16S rRNA gene, type strain DSM 9390T, clone 2 | LN824002 | 1532 | ena | 82989 |
3468 | Buttiauxella ferragutiae partial 16S rRNA gene, type strain DSM 9390T, clone 3 | LN824003 | 1531 | ena | 82989 |
3468 | Buttiauxella ferragutiae partial 16S rRNA gene, type strain DSM 9390T, clone 4 | LN824004 | 1532 | ena | 82989 |
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Buttiauxella ferragutiae ATCC 51602 | GCA_001654915 | contig | ncbi | 1354252 |
66792 | Buttiauxella ferragutiae ATCC 51602 | 1354252.4 | wgs | patric | 1354252 |
66792 | Buttiauxella ferragutiae ATCC 51602 | 2791354921 | draft | img | 1354252 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 100 | no |
motile | yes | 88.512 | no |
gram-positive | no | 98.028 | no |
anaerobic | no | 97.523 | no |
halophile | no | 88.016 | no |
spore-forming | no | 93.768 | no |
thermophile | no | 99.441 | yes |
glucose-util | yes | 94.044 | no |
flagellated | no | 67.027 | no |
aerobic | yes | 86.187 | no |
glucose-ferment | yes | 93.288 | no |
External links
@ref: 3468
culture collection no.: DSM 9390, ATCC 51602, CCM 4874, CDC 1180-81, CUETM 78-31, CCUG 35507, CIP 106355
straininfo link
- @ref: 73805
- straininfo: 265459
literature
- topic: Phylogeny
- Pubmed-ID: 11534554
- title: Emended description of Buttiauxella agrestis with recognition of six new species of Buttiauxella and two new species of Kluyvera: Buttiauxella ferragutiae sp. nov., Buttiauxella gaviniae sp. nov., Buttiauxella brennerae sp. nov., Buttiauxella izardii sp. nov., Buttiauxella noackiae sp. nov., Buttiauxella warmboldiae sp. nov., Kluyvera cochleae sp. nov., and Kluyvera georgiana sp. nov.
- authors: Muller HE, Brenner DJ, Fanning GR, Grimont PA, Kampfer P
- journal: Int J Syst Bacteriol
- DOI: 10.1099/00207713-46-1-50
- year: 1996
- mesh: Animals, Bacterial Typing Techniques, DNA, Bacterial/genetics, Enterobacteriaceae/*classification/genetics/isolation & purification/metabolism, Humans, Intestines/microbiology, Mollusca/*microbiology, Nucleic Acid Hybridization, Phenotype, Snails/*microbiology, Soil Microbiology, Terminology as Topic, Water Microbiology
- topic2: Pathogenicity
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
3468 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 9390) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-9390 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
39502 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/18476 | ||||
52777 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 35507) | https://www.ccug.se/strain?id=35507 | |||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
68368 | Automatically annotated from API 20E | |||||
68371 | Automatically annotated from API 50CH acid | |||||
68382 | Automatically annotated from API zym | |||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
73805 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID265459.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
119330 | Curators of the CIP | Collection of Institut Pasteur (CIP 106355) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20106355 |