Strain identifier

BacDive ID: 4313

Type strain: Yes

Species: Buttiauxella ferragutiae

Strain Designation: 78-31

Strain history: CIP <- 1999, P.A.D. Grimont, Inst. Pasteur, Paris, France <- F. Gavini, CUETM: strain 78-31

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 3468

BacDive-ID: 4313

DSM-Number: 9390

keywords: genome sequence, 16S sequence, Bacteria, facultative anaerobe, mesophilic, motile

description: Buttiauxella ferragutiae 78-31 is a facultative anaerobe, mesophilic, motile bacterium that was isolated from soil.

NCBI tax id

NCBI tax idMatching level
1354252strain
82989species

strain history

@refhistory
3468<- H. E. Müller <- CUETM
119330CIP <- 1999, P.A.D. Grimont, Inst. Pasteur, Paris, France <- F. Gavini, CUETM: strain 78-31

doi: 10.13145/bacdive4313.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Enterobacteriaceae
  • genus: Buttiauxella
  • species: Buttiauxella ferragutiae
  • full scientific name: Buttiauxella ferragutiae Müller et al. 1996

@ref: 3468

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacteriales, not validated

family: Enterobacteriaceae

genus: Buttiauxella

species: Buttiauxella ferragutiae

full scientific name: Buttiauxella ferragutiae Müller et al. 1996

strain designation: 78-31

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram staincell shape
69480yes97.934
6948099.987negative
119330yesnegativerod-shaped

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
3468CASO AGAR (MERCK 105458) (DSMZ Medium 220)yeshttps://mediadive.dsmz.de/medium/220Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water
39502MEDIUM 29- Brain heart agaryesDistilled water make up to (1000.000 ml);Brain heart infusion agar (52.000 g)
119330CIP Medium 29yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=29

culture temp

@refgrowthtypetemperaturerange
3468positivegrowth28mesophilic
39502positivegrowth30mesophilic
119330positivegrowth5-37
119330nogrowth41thermophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 119330
  • oxygen tolerance: facultative anaerobe

spore formation

@refspore formationconfidence
69481no100
69480no99.52

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate+builds acid from
68371gluconate+builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose-builds acid from32528
68371gentiobiose+builds acid from28066
68371xylitol-builds acid from17151
68371glycogen-builds acid from28087
68371starch-builds acid from28017
68371raffinose-builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371trehalose+builds acid from27082
68371sucrose-builds acid from17992
68371melibiose+builds acid from28053
68371lactose+builds acid from17716
68371maltose+builds acid from17306
68371cellobiose+builds acid from17057
68371salicin+builds acid from17814
68371esculin+builds acid from4853
68371arbutin+builds acid from18305
68371amygdalin-builds acid from27613
68371N-acetylglucosamine+builds acid from59640
68371methyl alpha-D-glucopyranoside+builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol+builds acid from17924
68371D-mannitol+builds acid from16899
68371myo-inositol+builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose+builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose+builds acid from16024
68371D-fructose+builds acid from15824
68371D-glucose+builds acid from17634
68371D-galactose+builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose+builds acid from65328
68371D-xylose+builds acid from65327
68371D-ribose+builds acid from16988
68371L-arabinose-builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol+builds acid from17754
68368L-arabinose+fermentation30849
68368amygdalin+fermentation27613
68368melibiose+fermentation28053
68368sucrose-fermentation17992
68368L-rhamnose+fermentation62345
68368sorbitol+fermentation30911
68368myo-inositol+fermentation17268
68368D-mannitol+fermentation16899
68368D-glucose+fermentation17634
68368gelatin-hydrolysis5291
68368tryptophan-energy source27897
68368urea-hydrolysis16199
68368citrate+assimilation16947
68368ornithine+degradation18257
68368lysine+degradation25094
68368arginine-hydrolysis29016
119330mannitol+fermentation29864
119330citrate+carbon source16947
119330glucose+fermentation17234
119330lactose-fermentation17716
119330nitrate+reduction17632
119330nitrite-reduction16301
119330malonate-assimilation15792
119330sodium thiosulfate-builds gas from132112
119330glucose+degradation17234

antibiotic resistance

  • @ref: 119330
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

@refChebi-IDmetaboliteproduction
6836815688acetoinyes
6836835581indoleno
6836816136hydrogen sulfideno
11933035581indoleno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole testmethylred-test
6836815688acetoin+
6836835581indole-
11933015688acetoin-
11933017234glucose+

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382beta-glucosidase+3.2.1.21
68382alpha-glucosidase+3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase+3.2.1.23
68382alpha-galactosidase+3.2.1.22
68382naphthol-AS-BI-phosphohydrolase+
68382acid phosphatase+3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin+3.4.21.4
68382cystine arylamidase+3.4.11.3
68382valine arylamidase+
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)-
68382esterase (C 4)+
68382alkaline phosphatase+3.1.3.1
68368cytochrome oxidase-1.9.3.1
68368gelatinase-
68368tryptophan deaminase-4.1.99.1
68368urease-3.5.1.5
68368ornithine decarboxylase+4.1.1.17
68368lysine decarboxylase+4.1.1.18
68368arginine dihydrolase-3.5.3.6
68368beta-galactosidase+3.2.1.23
119330oxidase-
119330beta-galactosidase+3.2.1.23
119330alcohol dehydrogenase-1.1.1.1
119330gelatinase-
119330catalase+1.11.1.6
119330lysine decarboxylase+4.1.1.18
119330ornithine decarboxylase-4.1.1.17
119330phenylalanine ammonia-lyase-4.3.1.24
119330tryptophan deaminase-
119330urease-3.5.1.5

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    52777C12:02.612
    52777C14:0814
    52777C15:0215
    52777C16:01516
    52777C12:0 ALDE ?2.510.915
    52777C13:0 3OH/C15:1 i I/H0.514.469
    52777C13:0 ISO 2OH0.513.814
    52777C14:0 3OH/C16:1 ISO I1615.485
    52777C16:1 ω7c42.615.819
    52777C17:0 CYCLO2.216.888
    52777C18:1 ω7c /12t/9t7.417.824
    52777Unidentified0.718.558
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
119330-++--++++-++++-+++--

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGELGLUMANINOSorRHASACMELAMYARAOX
3468+-+++----+-+++++-+++-

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
119330+---+++--++++-+-+++-++-+++++++-+------+-------++-

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
119330+++++-+-++++-+++++++++++-------++++++-----+++----+----+++--++++++----------+---++-+---+--++++++----

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinent
3468soilFranceFRAEurope
119330Environment, SoilFranceFRAEurope

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_2027.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_6;96_7;97_411;98_1588;99_2027&stattab=map
  • Last taxonomy: Buttiauxella
  • 16S sequence: LN824004
  • Sequence Identity:
  • Total samples: 7158
  • soil counts: 778
  • aquatic counts: 1274
  • animal counts: 4089
  • plant counts: 1017

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
34681Risk group (German classification)
1193301Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Buttiauxella ferragutiae 16S rRNA gene (strain DSM 9390)AJ2334021504ena82989
3468Buttiauxella ferragutiae partial 16S rRNA gene, type strain DSM 9390T, clone 1LN8240011530ena82989
3468Buttiauxella ferragutiae partial 16S rRNA gene, type strain DSM 9390T, clone 2LN8240021532ena82989
3468Buttiauxella ferragutiae partial 16S rRNA gene, type strain DSM 9390T, clone 3LN8240031531ena82989
3468Buttiauxella ferragutiae partial 16S rRNA gene, type strain DSM 9390T, clone 4LN8240041532ena82989

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Buttiauxella ferragutiae ATCC 51602GCA_001654915contigncbi1354252
66792Buttiauxella ferragutiae ATCC 516021354252.4wgspatric1354252
66792Buttiauxella ferragutiae ATCC 516022791354921draftimg1354252

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileyes88.512no
gram-positiveno98.028no
anaerobicno97.523no
halophileno88.016no
spore-formingno93.768no
thermophileno99.441yes
glucose-utilyes94.044no
flagellatedno67.027no
aerobicyes86.187no
glucose-fermentyes93.288no

External links

@ref: 3468

culture collection no.: DSM 9390, ATCC 51602, CCM 4874, CDC 1180-81, CUETM 78-31, CCUG 35507, CIP 106355

straininfo link

  • @ref: 73805
  • straininfo: 265459

literature

  • topic: Phylogeny
  • Pubmed-ID: 11534554
  • title: Emended description of Buttiauxella agrestis with recognition of six new species of Buttiauxella and two new species of Kluyvera: Buttiauxella ferragutiae sp. nov., Buttiauxella gaviniae sp. nov., Buttiauxella brennerae sp. nov., Buttiauxella izardii sp. nov., Buttiauxella noackiae sp. nov., Buttiauxella warmboldiae sp. nov., Kluyvera cochleae sp. nov., and Kluyvera georgiana sp. nov.
  • authors: Muller HE, Brenner DJ, Fanning GR, Grimont PA, Kampfer P
  • journal: Int J Syst Bacteriol
  • DOI: 10.1099/00207713-46-1-50
  • year: 1996
  • mesh: Animals, Bacterial Typing Techniques, DNA, Bacterial/genetics, Enterobacteriaceae/*classification/genetics/isolation & purification/metabolism, Humans, Intestines/microbiology, Mollusca/*microbiology, Nucleic Acid Hybridization, Phenotype, Snails/*microbiology, Soil Microbiology, Terminology as Topic, Water Microbiology
  • topic2: Pathogenicity

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
3468Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 9390)https://www.dsmz.de/collection/catalogue/details/culture/DSM-9390
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
39502Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/18476
52777Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 35507)https://www.ccug.se/strain?id=35507
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68368Automatically annotated from API 20E
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
73805Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID265459.1StrainInfo: A central database for resolving microbial strain identifiers
119330Curators of the CIPCollection of Institut Pasteur (CIP 106355)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20106355