Strain identifier

BacDive ID: 4310

Type strain: Yes

Species: Budvicia aquatica

Strain Designation: 20186HG01, M350, Eb 13/82, aldova 20 186HGO1

Strain history: CIP <- 1988, P.A.D. Grimont, Inst. Pasteur, Paris, France: strain aldova 20 186HGO1

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 1922

BacDive-ID: 4310

DSM-Number: 5075

keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-negative

description: Budvicia aquatica 20186HG01 is a mesophilic, Gram-negative bacterium that was isolated from drinking water.

NCBI tax id

NCBI tax idMatching level
82979species
1111728strain

strain history

@refhistory
1922<- ATCC <- E. Aldova and J. Sourek; Eb 13/82 <- A. Brezinova
405771988, P.A.D. Grimont, Inst. Pasteur, Paris, France: strain aldova 20 186HGO1
116429CIP <- 1988, P.A.D. Grimont, Inst. Pasteur, Paris, France: strain aldova 20 186HGO1

doi: 10.13145/bacdive4310.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Budviciaceae
  • genus: Budvicia
  • species: Budvicia aquatica
  • full scientific name: Budvicia aquatica Bouvet et al. 1985
  • synonyms

    • @ref: 20215
    • synonym: Budvicia aquatica

@ref: 1922

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacteriales, not validated

family: Budviciaceae

genus: Budvicia

species: Budvicia aquatica

full scientific name: Budvicia aquatica Bouvet et al. 1985

strain designation: 20186HG01, M350, Eb 13/82, aldova 20 186HGO1

type strain: yes

Morphology

cell morphology

  • @ref: 69480
  • gram stain: negative
  • confidence: 99.961

multimedia

@refmultimedia contentcaptionintellectual property rights
66793EM_DSM_5075_1.jpgelectron microscopic image© HZI/Manfred Rohde
66793EM_DSM_5075_2.jpgelectron microscopic image© HZI/Manfred Rohde
66793EM_DSM_5075_3.jpgelectron microscopic image© HZI/Manfred Rohde
66793EM_DSM_5075_4.jpgelectron microscopic image© HZI/Manfred Rohde
66793EM_DSM_5075_5.jpgelectron microscopic image© HZI/Manfred Rohde

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
1922REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a)yeshttps://mediadive.dsmz.de/medium/1aName: REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
40577MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)
116429CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3

culture temp

@refgrowthtypetemperaturerange
1922positivegrowth26mesophilic
40577positivegrowth22psychrophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481no100
69480no98.949

compound production

  • @ref: 1922
  • compound: hydrogen sulfide

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836830849L-arabinose+fermentation
6836827613amygdalin-fermentation
6836828053melibiose-fermentation
6836817992sucrose-fermentation
6836862345L-rhamnose+fermentation
6836830911sorbitol-fermentation
6836817268myo-inositol-fermentation
6836816899D-mannitol+fermentation
6836817634D-glucose+fermentation
683685291gelatin-hydrolysis
6836827897tryptophan-energy source
6836816199urea+hydrolysis
6836816947citrate-assimilation
6836818257ornithine-degradation
6836825094lysine-degradation
6836829016arginine-hydrolysis

metabolite production

@refChebi-IDmetaboliteproduction
6836815688acetoinno
6836835581indoleno
6836816136hydrogen sulfideyes

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
6836815688acetoin-
6836835581indole-

enzymes

@refvalueactivityec
68368cytochrome oxidase-1.9.3.1
68368gelatinase-
68368tryptophan deaminase-4.1.99.1
68368urease+3.5.1.5
68368ornithine decarboxylase-4.1.1.17
68368lysine decarboxylase-4.1.1.18
68368arginine dihydrolase-3.5.3.6
68368beta-galactosidase+3.2.1.23

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGELGLUMANINOSorRHASACMELAMYARAOX
1922+----++----++--+---+-

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
1922drinking water
116429Environment, WaterBilàCzech RepublicCZEEurope

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic
  • Cat3: #Freshwater

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
19221Risk group (German classification)
1164291Risk group (French classification)

Sequence information

16S sequences

  • @ref: 20218
  • description: Budvicia aquatica 16S rRNA gene (strain DSM 5075)
  • accession: AJ233407
  • length: 1481
  • database: ena
  • NCBI tax ID: 1111728

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Budvicia aquatica DSM 5075 = ATCC 35567GCA_000427805scaffoldncbi1111728
66792Budvicia aquatica DSM 50751111728.3wgspatric1111728
66792Budvicia aquatica DSM 5075, ATCC 355672513237113draftimg1111728

GC content

  • @ref: 1922
  • GC-content: 46.0

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileyes81.823no
flagellatedno57.483no
gram-positiveno97.771no
anaerobicno91.527no
aerobicyes67.093no
halophileno94.749no
spore-formingno93.882no
glucose-utilyes89.455no
thermophileno99.715yes
glucose-fermentyes86.886yes

External links

@ref: 1922

culture collection no.: DSM 5075, ATCC 35567, CNCTC 20186, CIP 103240, CCUG 21129, JCM 3902, LMG 8813

straininfo link

  • @ref: 73802
  • straininfo: 1364

literature

  • topic: Phylogeny
  • Pubmed-ID: 22407790
  • title: Budvicia diplopodorum sp. nov. and emended description of the genus Budvicia.
  • authors: Lang E, Schumann P, Knapp BA, Kumar R, Sproer C, Insam H
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.036749-0
  • year: 2012
  • mesh: Animals, Arthropods/*microbiology, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Enterobacteriaceae/*classification/genetics/isolation & purification, Fatty Acids/analysis, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
1922Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 5075)https://www.dsmz.de/collection/catalogue/details/culture/DSM-5075
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
40577Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/15016
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66793Mukherjee et al.10.1038/nbt.3886GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life 35: 676-683 201728604660
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
68368Automatically annotated from API 20E
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
73802Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID1364.1StrainInfo: A central database for resolving microbial strain identifiers
116429Curators of the CIPCollection of Institut Pasteur (CIP 103240)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103240