Strain identifier
BacDive ID: 430
Type strain: 
Species: Alicyclobacillus fastidiosus
Strain Designation: S-TAB
Strain history: IAM 15229 <-- K. Goto S-TAB.
NCBI tax ID(s): 392011 (species)
version 8.1 (current version)
General
@ref: 7310
BacDive-ID: 430
DSM-Number: 17978
keywords: 16S sequence, Bacteria, aerobe, spore-forming, thermophilic, Gram-positive, rod-shaped
description: Alicyclobacillus fastidiosus S-TAB is an aerobe, spore-forming, thermophilic bacterium that was isolated from apple juice.
NCBI tax id
- NCBI tax id: 392011
- Matching level: species
strain history
| @ref | history |
|---|---|
| 7310 | <- Keiichi Goto, S-TAB |
| 67770 | IAM 15229 <-- K. Goto S-TAB. |
doi: 10.13145/bacdive430.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Alicyclobacillaceae
- genus: Alicyclobacillus
- species: Alicyclobacillus fastidiosus
- full scientific name: Alicyclobacillus fastidiosus Goto et al. 2007
@ref: 7310
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Alicyclobacillaceae
genus: Alicyclobacillus
species: Alicyclobacillus fastidiosus
full scientific name: Alicyclobacillus fastidiosus Goto et al. 2007
strain designation: S-TAB
type strain: yes
Morphology
cell morphology
- @ref: 31943
- gram stain: positive
- cell length: 04-05 µm
- cell width: 0.9-1 µm
- cell shape: rod-shaped
- motility: no
pigmentation
- @ref: 31943
- production: no
Culture and growth conditions
culture medium
- @ref: 7310
- name: BACILLUS ACIDOCALDARIUS MEDIUM (DSMZ Medium 13)
- growth: yes
- link: https://mediadive.dsmz.de/medium/13
- composition: Name: BACILLUS ACIDOCALDARIUS MEDIUM (DSMZ Medium 13) Composition: Agar 20.0 g/l Glucose 1.0 g/l Yeast extract 1.0 g/l KH2PO4 0.6 g/l MgSO4 x 7 H2O 0.5 g/l CaCl2 x 2 H2O 0.25 g/l (NH4)2SO4 0.2 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 7310 | positive | growth | 45 | thermophilic |
| 31943 | positive | growth | 20-55 | |
| 31943 | positive | optimum | 40-45 | thermophilic |
| 67770 | positive | growth | 45 | thermophilic |
culture pH
| @ref | ability | type | pH | PH range |
|---|---|---|---|---|
| 31943 | positive | growth | 4.0-4.5 | acidophile |
| 31943 | positive | optimum | 4.25 |
Physiology and metabolism
oxygen tolerance
- @ref: 31943
- oxygen tolerance: aerobe
spore formation
- @ref: 31943
- spore formation: yes
halophily
| @ref | salt | growth | tested relation | concentration |
|---|---|---|---|---|
| 31943 | NaCl | positive | growth | 0-2 % |
| 31943 | NaCl | positive | optimum | 1 % |
observation
- @ref: 67770
- observation: quinones: MK-7
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 31943 | 22599 | arabinose | + | carbon source |
| 31943 | 33984 | fucose | + | carbon source |
| 31943 | 28260 | galactose | + | carbon source |
| 31943 | 29864 | mannitol | + | carbon source |
| 31943 | 16634 | raffinose | + | carbon source |
| 31943 | 26546 | rhamnose | + | carbon source |
| 31943 | 27082 | trehalose | + | carbon source |
| 31943 | 18222 | xylose | + | carbon source |
enzymes
- @ref: 31943
- value: catalase
- activity: +
- ec: 1.11.1.6
Isolation, sampling and environmental information
isolation
| @ref | sample type | country | origin.country | continent |
|---|---|---|---|---|
| 7310 | apple juice | Japan | JPN | Asia |
| 67770 | Apple juice |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Food production | #Beverage |
| #Host | #Plants | #Tree |
| #Host Body-Site | #Plant | #Fruit (Seed) |
Safety information
risk assessment
- @ref: 7310
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 7310
- description: Alicyclobacillus fastidiosus gene for 16S ribosomal RNA, partial sequence
- accession: AB264021
- length: 1514
- database: ena
- NCBI tax ID: 392011
GC content
| @ref | GC-content | method |
|---|---|---|
| 7310 | 53.9 | |
| 67770 | 53.9 | high performance liquid chromatography (HPLC) |
External links
@ref: 7310
culture collection no.: DSM 17978, IAM 15229, JCM 21683, NBRC 103109
straininfo link
- @ref: 70109
- straininfo: 309419
literature
- topic: Phylogeny
- Pubmed-ID: 17551043
- title: Proposal of six species of moderately thermophilic, acidophilic, endospore-forming bacteria: Alicyclobacillus contaminans sp. nov., Alicyclobacillus fastidiosus sp. nov., Alicyclobacillus kakegawensis sp. nov., Alicyclobacillus macrosporangiidus sp. nov., Alicyclobacillus sacchari sp. nov. and Alicyclobacillus shizuokensis sp. nov.
- authors: Goto K, Mochida K, Kato Y, Asahara M, Fujita R, An SY, Kasai H, Yokota A
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.64692-0
- year: 2007
- mesh: Aerobiosis, Bacterial Proteins/genetics, Bacterial Typing Techniques, Beverages/*microbiology, Carbohydrate Metabolism, Carboxylic Acids/metabolism, DNA Gyrase/genetics, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, *Environmental Microbiology, Fatty Acids/analysis, Genes, rRNA, Gram-Positive Endospore-Forming Bacteria/*classification/cytology/*isolation & purification/physiology, Guaiacol/metabolism, Hydrogen-Ion Concentration, Microscopy, Phase-Contrast, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, Quinones/analysis, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, Temperature
- topic2: Metabolism
Reference
| @id | authors | catalogue | doi/url | title | ID_cross_reference | pubmed |
|---|---|---|---|---|---|---|
| 7310 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 17978) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-17978 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 31943 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 28199 | 28776041 | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 70109 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID309419.1 | StrainInfo: A central database for resolving microbial strain identifiers |