Strain identifier
BacDive ID: 4288
Type strain: 
Species: Thioalkalivibrio versutus
Strain Designation: AL2
Strain history: <- D. Y. Sorokin; AL2
NCBI tax ID(s): 106634 (species)
version 8.1 (current version)
General
@ref: 5136
BacDive-ID: 4288
DSM-Number: 13738
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Thioalkalivibrio versutus AL2 is a mesophilic bacterium that was isolated from soda lake.
NCBI tax id
- NCBI tax id: 106634
- Matching level: species
strain history
- @ref: 5136
- history: <- D. Y. Sorokin; AL2
doi: 10.13145/bacdive4288.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Chromatiales
- family: Ectothiorhodospiraceae
- genus: Thioalkalivibrio
- species: Thioalkalivibrio versutus
- full scientific name: Thioalkalivibrio versutus corrig. Sorokin et al. 2001
synonyms
- @ref: 20215
- synonym: Thialkalivibrio versutus
@ref: 5136
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Chromatiales
family: Ectothiorhodospiraceae
genus: Thioalkalivibrio
species: Thioalkalivibrio versutus
full scientific name: Thioalkalivibrio versutus Sorokin et al. 2001
strain designation: AL2
type strain: yes
Morphology
multimedia
| @ref | multimedia content | caption | intellectual property rights |
|---|---|---|---|
| 66793 | EM_DSM_13738_1.jpg | electron microscopic image | © HZI/Manfred Rohde |
| 66793 | EM_DSM_13738_2.jpg | electron microscopic image | © HZI/Manfred Rohde |
| 66793 | EM_DSM_13738_3.jpg | electron microscopic image | © HZI/Manfred Rohde |
| 66793 | EM_DSM_13738_4.jpg | electron microscopic image | © HZI/Manfred Rohde |
| 66793 | EM_DSM_13738_5.jpg | electron microscopic image | © HZI/Manfred Rohde |
Culture and growth conditions
culture medium
- @ref: 5136
- name: ALKALIPHILIC SULPHUR RESPIRING STRAINS MEDIUM (DSMZ Medium 925)
- growth: yes
- link: https://mediadive.dsmz.de/medium/925
- composition: Name: ALKALIPHILIC SULPHUR RESPIRING STRAINS MEDIUM (DSMZ Medium 925) Composition: Na2CO3 20.0 g/l NaHCO3 10.0 g/l NaCl 5.0 g/l K2HPO4 1.0 g/l MgCl2 x 6 H2O 0.2 g/l H3BO3 0.0006 g/l CoCl2 x 6 H2O 0.0004 g/l ZnSO4 x 7 H2O 0.0002 g/l Na2MoO4 x 2 H2O 6e-05 g/l MnCl2 x 4 H2O 6e-05 g/l NiCl2 x 6 H2O 4e-05 g/l CuCl2 x 2 H2O 2e-05 g/l EDTA 1e-05 g/l FeSO4 x 7 H2O 4e-06 g/l Distilled water
culture temp
- @ref: 5136
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 5136
- sample type: soda lake
- geographic location: Siberia
- country: Russia
- origin.country: RUS
- continent: Asia
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Lake (large) |
| #Condition | #Alkaline |
taxonmaps
- @ref: 69479
- File name: preview.99_1818.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_56;96_421;97_477;98_1437;99_1818&stattab=map
- Last taxonomy: Thioalkalivibrio versutus subclade
- 16S sequence: FR749906
- Sequence Identity:
- Total samples: 1023
- soil counts: 133
- aquatic counts: 620
- animal counts: 264
- plant counts: 6
Safety information
risk assessment
- @ref: 5136
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 5136 | Thioalcalovibrio versutus 16S ribosomal RNA gene, partial sequence | AF126546 | 1433 | ena | 886877 |
| 5136 | Thioalkalivibrio versutus partial 16S rRNA gene, type strain DSM 13738T | FR749906 | 1538 | ena | 106634 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Thioalkalivibrio versutus AL2 | 886877.3 | wgs | patric | 886877 |
| 66792 | Thioalkalivibrio versutus AL2 | 2517487020 | draft | img | 886877 |
GC content
- @ref: 5136
- GC-content: 63.7
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | yes | 89.7 | no |
| flagellated | yes | 75.088 | no |
| gram-positive | no | 98.777 | no |
| anaerobic | no | 68.317 | no |
| halophile | no | 59.874 | no |
| spore-forming | no | 95.102 | no |
| thermophile | no | 94.529 | yes |
| glucose-util | yes | 63.431 | no |
| aerobic | no | 61.757 | no |
| glucose-ferment | no | 83.825 | no |
External links
@ref: 5136
culture collection no.: DSM 13738, CBS 100464
straininfo link
- @ref: 73782
- straininfo: 101026
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 5136 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 13738) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-13738 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 66793 | Mukherjee et al. | 10.1038/nbt.3886 | GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life | 35: 676-683 2017 | 28604660 | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 73782 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID101026.1 | StrainInfo: A central database for resolving microbial strain identifiers |