Strain identifier
BacDive ID: 4287
Type strain:
Species: Thioalkalivibrio nitratis
Strain history: <- D. Y. Sorokin; ALJ12
NCBI tax ID(s): 107820 (species)
version 8.1 (current version)
General
@ref: 5139
BacDive-ID: 4287
DSM-Number: 13741
keywords: 16S sequence, Bacteria, mesophilic
description: Thioalkalivibrio nitratis DSM 13741 is a mesophilic bacterium that was isolated from soda lake.
NCBI tax id
- NCBI tax id: 107820
- Matching level: species
strain history
- @ref: 5139
- history: <- D. Y. Sorokin; ALJ12
doi: 10.13145/bacdive4287.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Chromatiales
- family: Ectothiorhodospiraceae
- genus: Thioalkalivibrio
- species: Thioalkalivibrio nitratis
- full scientific name: Thioalkalivibrio nitratis corrig. Sorokin et al. 2001
synonyms
- @ref: 20215
- synonym: Thialkalivibrio nitratis
@ref: 5139
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Chromatiales
family: Ectothiorhodospiraceae
genus: Thioalkalivibrio
species: Thioalkalivibrio nitratis
full scientific name: Thioalkalivibrio nitratis Sorokin et al. 2001
type strain: yes
Culture and growth conditions
culture medium
- @ref: 5139
- name: ALKALIPHILIC SULPHUR RESPIRING STRAINS MEDIUM (DSMZ Medium 925)
- growth: yes
- link: https://mediadive.dsmz.de/medium/925
- composition: Name: ALKALIPHILIC SULPHUR RESPIRING STRAINS MEDIUM (DSMZ Medium 925) Composition: Na2CO3 20.0 g/l NaHCO3 10.0 g/l NaCl 5.0 g/l K2HPO4 1.0 g/l MgCl2 x 6 H2O 0.2 g/l H3BO3 0.0006 g/l CoCl2 x 6 H2O 0.0004 g/l ZnSO4 x 7 H2O 0.0002 g/l Na2MoO4 x 2 H2O 6e-05 g/l MnCl2 x 4 H2O 6e-05 g/l NiCl2 x 6 H2O 4e-05 g/l CuCl2 x 2 H2O 2e-05 g/l EDTA 1e-05 g/l FeSO4 x 7 H2O 4e-06 g/l Distilled water
culture temp
- @ref: 5139
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 5139
- sample type: soda lake
- country: Kenya
- origin.country: KEN
- continent: Africa
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Environmental | #Aquatic | #Lake (large) |
#Condition | #Alkaline |
Safety information
risk assessment
- @ref: 5139
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 5139
- description: Thioalcalovibrio nitratus 16S ribosomal RNA gene, partial sequence
- accession: AF126547
- length: 1459
- database: ena
- NCBI tax ID: 107820
GC content
- @ref: 5139
- GC-content: 62.1
External links
@ref: 5139
culture collection no.: DSM 13741, NCCB 100002, ALJ 12
straininfo link
- @ref: 73781
- straininfo: 101023
Reference
@id | authors | catalogue | doi/url | title |
---|---|---|---|---|
5139 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 13741) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-13741 | |
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
73781 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID101023.1 | StrainInfo: A central database for resolving microbial strain identifiers |