Strain identifier

BacDive ID: 4287

Type strain: Yes

Species: Thioalkalivibrio nitratis

Strain history: <- D. Y. Sorokin; ALJ12

NCBI tax ID(s): 107820 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 5139

BacDive-ID: 4287

DSM-Number: 13741

keywords: 16S sequence, Bacteria, mesophilic

description: Thioalkalivibrio nitratis DSM 13741 is a mesophilic bacterium that was isolated from soda lake.

NCBI tax id

  • NCBI tax id: 107820
  • Matching level: species

strain history

  • @ref: 5139
  • history: <- D. Y. Sorokin; ALJ12

doi: 10.13145/bacdive4287.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Chromatiales
  • family: Ectothiorhodospiraceae
  • genus: Thioalkalivibrio
  • species: Thioalkalivibrio nitratis
  • full scientific name: Thioalkalivibrio nitratis corrig. Sorokin et al. 2001
  • synonyms

    • @ref: 20215
    • synonym: Thialkalivibrio nitratis

@ref: 5139

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Chromatiales

family: Ectothiorhodospiraceae

genus: Thioalkalivibrio

species: Thioalkalivibrio nitratis

full scientific name: Thioalkalivibrio nitratis Sorokin et al. 2001

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 5139
  • name: ALKALIPHILIC SULPHUR RESPIRING STRAINS MEDIUM (DSMZ Medium 925)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/925
  • composition: Name: ALKALIPHILIC SULPHUR RESPIRING STRAINS MEDIUM (DSMZ Medium 925) Composition: Na2CO3 20.0 g/l NaHCO3 10.0 g/l NaCl 5.0 g/l K2HPO4 1.0 g/l MgCl2 x 6 H2O 0.2 g/l H3BO3 0.0006 g/l CoCl2 x 6 H2O 0.0004 g/l ZnSO4 x 7 H2O 0.0002 g/l Na2MoO4 x 2 H2O 6e-05 g/l MnCl2 x 4 H2O 6e-05 g/l NiCl2 x 6 H2O 4e-05 g/l CuCl2 x 2 H2O 2e-05 g/l EDTA 1e-05 g/l FeSO4 x 7 H2O 4e-06 g/l Distilled water

culture temp

  • @ref: 5139
  • growth: positive
  • type: growth
  • temperature: 30
  • range: mesophilic

Isolation, sampling and environmental information

isolation

  • @ref: 5139
  • sample type: soda lake
  • country: Kenya
  • origin.country: KEN
  • continent: Africa

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Lake (large)
#Condition#Alkaline

Safety information

risk assessment

  • @ref: 5139
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 5139
  • description: Thioalcalovibrio nitratus 16S ribosomal RNA gene, partial sequence
  • accession: AF126547
  • length: 1459
  • database: ena
  • NCBI tax ID: 107820

GC content

  • @ref: 5139
  • GC-content: 62.1

External links

@ref: 5139

culture collection no.: DSM 13741, NCCB 100002, ALJ 12

straininfo link

  • @ref: 73781
  • straininfo: 101023

Reference

@idauthorscataloguedoi/urltitle
5139Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 13741)https://www.dsmz.de/collection/catalogue/details/culture/DSM-13741
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
73781Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID101023.1StrainInfo: A central database for resolving microbial strain identifiers