Strain identifier
BacDive ID: 4281
Type strain: 
Species: Halorhodospira abdelmalekii
Strain history: <- E.A. Galinski <- J.F. Imhoff
NCBI tax ID(s): 421629 (species)
version 8.1 (current version)
General
@ref: 965
BacDive-ID: 4281
DSM-Number: 2110
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic, motile
description: Halorhodospira abdelmalekii DSM 2110 is an anaerobe, mesophilic, motile bacterium of the family Halorhodospiraceae.
NCBI tax id
- NCBI tax id: 421629
- Matching level: species
strain history
- @ref: 965
- history: <- E.A. Galinski <- J.F. Imhoff
doi: 10.13145/bacdive4281.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Chromatiales
- family: Halorhodospiraceae
- genus: Halorhodospira
- species: Halorhodospira abdelmalekii
- full scientific name: Halorhodospira abdelmalekii (Imhoff and Trüper 1982) Imhoff and Süling 1997
synonyms
@ref synonym 20215 Halochlorospira abdelmalekii 20215 Ectothiorhodospira abdelmalekii
@ref: 965
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Chromatiales
family: Ectothiorhodospiraceae
genus: Halorhodospira
species: Halorhodospira abdelmalekii
full scientific name: Halorhodospira abdelmalekii (Imhoff and Trüper 1982) Imhoff and Süling 1997
type strain: yes
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | yes | 91.816 | |
| 69480 | 100 | negative |
Culture and growth conditions
culture medium
- @ref: 965
- name: ECTOTHIORHODOSPIRA ABDELMALEKII MEDIUM (DSMZ Medium 430)
- growth: yes
- link: https://mediadive.dsmz.de/medium/430
- composition: Name: ECTOTHIORHODOSPIRA ABDELMALEKII MEDIUM (DSMZ Medium 430) Composition: NaCl 120.0 g/l Na2SO4 15.0 g/l NaHCO3 10.0 g/l Na2CO3 5.0 g/l Na-acetate 1.0 g/l KH2PO4 0.8 g/l NH4Cl 0.8 g/l Na2S x 9 H2O 0.5 g/l MgCl2 x 6 H2O 0.1 g/l CaCl2 x 2 H2O 0.05 g/l FeCl2 x 4 H2O 0.0018 g/l H3BO3 0.0005 g/l Nicotinic acid amide 0.00035 g/l Thiamine-HCl x 2 H2O 0.0003 g/l CoCl2 x 6 H2O 0.00025 g/l p-Aminobenzoic acid 0.0002 g/l Pyridoxal hydrochloride 0.0001 g/l Biotin 0.0001 g/l ZnCl2 0.0001 g/l Calcium pantothenate 0.0001 g/l MnCl2 x 4 H2O 7e-05 g/l Vitamin B12 5e-05 g/l Na2MoO4 x 2 H2O 3e-05 g/l CuCl2 x 2 H2O 1e-05 g/l NiCl2 x 6 H2O 1e-05 g/l Na2SeO3 x 5 H2O 1e-05 g/l Distilled water
culture temp
- @ref: 965
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance | confidence |
|---|---|---|
| 965 | anaerobe | |
| 69480 | anaerobe | 90.802 |
spore formation
- @ref: 69480
- spore formation: no
- confidence: 99.99
Isolation, sampling and environmental information
isolation
- @ref: 965
- geographic location: Wadi Natrun
- country: Egypt
- origin.country: EGY
- continent: Africa
taxonmaps
- @ref: 69479
- File name: preview.99_157428.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15363;96_59384;97_76877;98_103753;99_157428&stattab=map
- Last taxonomy: Halorhodospira abdelmalekii subclade
- 16S sequence: X93477
- Sequence Identity:
- Total samples: 4
- aquatic counts: 3
- animal counts: 1
Safety information
risk assessment
- @ref: 965
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Halorhodospira abdelmalekii 16S rRNA gene, strain DSM 2110 | X93477 | 1482 | ena | 421629 |
| 965 | Halorhodospira abdelmalekii partial 16S rRNA gene, type strain DSM 2110T | HG515377 | 1481 | ena | 421629 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Halorhodospira abdelmalekii DSM 2110 | GCA_016583625 | contig | ncbi | 421629 |
| 66792 | Halorhodospira abdelmalekii strain DSM 2110 | 421629.5 | wgs | patric | 421629 |
GC content
- @ref: 965
- GC-content: 63.8
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | yes | 53 | no |
| gram-positive | no | 99.208 | no |
| anaerobic | yes | 99.113 | yes |
| halophile | no | 53.226 | no |
| spore-forming | no | 94.851 | no |
| glucose-util | no | 62.336 | no |
| aerobic | no | 98.537 | yes |
| flagellated | no | 54.959 | no |
| thermophile | no | 89.608 | yes |
| motile | yes | 87.722 | no |
| glucose-ferment | no | 74.456 | no |
External links
@ref: 965
culture collection no.: DSM 2110, ATCC 35917
straininfo link
- @ref: 73775
- straininfo: 41365
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 965 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 2110) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-2110 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 73775 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID41365.1 | StrainInfo: A central database for resolving microbial strain identifiers |